CF835007

Overview
NameCF835007
Unique NameCF835007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1735 contig Csv1_Contig1735:13..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835007 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 3 
Query:  198 GGFSIHGGTNGECPMDVVQLSSPTERDHYVRLLPFDNST-VVRESTDLNL-----------IEPVWTVGNYNASLGKWFLTTGGIVGHPGAKTLLNWFKLKKVSDSIYNLVHCPSDCDSCVKLCNKVG 545
            GG ++   T   CP  VVQ  S  +    V     D+   VVR STD+N+              VW + NY+ S GKW++TT G+ G PG  TL +WFK++K     Y    CPS CDSC  LC+ +G
Sbjct:   57 GGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184
[Close]
BLAST of CF835007 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 3 
Query:  198 GGFSIHGGT-NGE--CPMDVVQLSSPTERDHYVRLLPFD-NSTVVRESTDLNL-----------IEPVWTVGNYNASLGKWFLTTGGIVGHPGAKTLLNWFKLKKVSDS-IYNLVHCPSDCDSCVKLCNKVGIF 551
            GG ++   T NG   CP  VVQ     + D  +   P +    VVR STDLN+              VW +  Y+ S G++F+T GG+ G+PG +T+ +WFK+++   S  Y LV CP+ C SC   C  VGI+
Sbjct:   61 GGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIY 194
The following BLAST results are available for this feature:
BLAST of CF835007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC2.643e-1738.2821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.474e-1536.57Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06I07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835007 ID=CF835007; Name=CF835007; organism=Citrus sinensis; type=EST; length=692bp
CAGAAGTTAGCTATCCTTCAAAAAAATAAAGAAAATGAAGACTTCATTAG
TACCAAAACTCTCCTTCCTTATCCTTGCCTTGGCCACAAAAGCTCAGTTG
GGCACCTCATAATCTGAACCAGTCTTAGATGTCTATGGCAACAAGGTCGA
ATCCAACCTCGAGTATAAGCTTCTCGAAGTCAAAAATGGCACTAGTCGGT
GGATTCAGTATACATGGAGGCACAAATGGAGAGTGTCCGATGGACGTTGT
CCAACTAAGTTCTCCTACGGAAAGGGATCATTATGTAAGATTATTACCGT
TTGACAATTCTACAGTTGTCCGGGAATCCACTGATCTCAACTTGATAGAA
CCAGTATGGACAGTTGGTAACTATAATGCTTCATTAGGAAAATGGTTTCT
AACAACCGGAGGAATCGTCGGCCACCCAGGAGCTAAAACGTTGCTAAATT
GGTTTAAGCTTAAGAAAGTTAGTGACAGTATATACAATCTTGTTCATTGT
CCATCTGATTGCGATTCTTGCGTAAAACTCTGTAACAAAGTCGGCATCTT
TTATGTGGACGGAGTTCGACGTCTGGTTCTGGTTCGAGATGATGATCAGC
CTCTCCGGATGGTGTTATTTCCAGCTCCTAATCCTTCAAGATCCTCTATG
TAATGAATGACCTAGCTATATTATATATTCTGAATAATTTAC
back to top