CF835012

Overview
NameCF835012
Unique NameCF835012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835012_ssr361 microsatellite CF835012_ssr361:361..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.183e-74
Identity = 148/224 (66.07%), Postives = 154/224 (68.75%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            GPIPD+LG                GPIPMSLTNI +LQVLDLSNNRLSG  PDNGSFSLFTPISFANNLDLCGPVT RPC                      G S                         WWR+RKPQEFFFDVPAEEDP  HLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADG+LVAVKRLKEERTPGGELQFQTEV+MI+MA
Sbjct:  134 GPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSRPCPGSPPFSPPPPFIPPPIVPTPGGYSATGAIAGGVAAGAALLFAAPALAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMA 357          

HSP 2 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 2
Query:    2 LELYINNITGPIPSDLGNLTSLVSLDLYLNSFTWSYPGHIGKTVKI 139
            LELY NNITGP+PSDLGNLT+LVSLDLYLNSFT   P  +GK  K+
Sbjct:  101 LELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKL 146          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 2.114e-69
Identity = 139/224 (62.05%), Postives = 149/224 (66.52%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            GPIP++LG                G IPMSLTNI++LQVLDLSNNRLSG  PDNGSFSLFTPISFANNLDLCGPVT  PC                      G                           WWR+RKP + FFDVPAEEDP  HLGQLKRFSLRELQVA+D FSNKNILGRGGFGKVYKGRLADG+LVAVKRLKEERTPGGELQFQTEV+MI+MA
Sbjct:  131 GPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCPGSPPFSPPPPFIQPPPVSTPSGYGITGAIAGGVAAGAALLFAAPAIAFAWWRRRKPLDIFFDVPAEEDPEVHLGQLKRFSLRELQVASDGFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMA 354          

HSP 2 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 2
Query:    2 LELYINNITGPIPSDLGNLTSLVSLDLYLNSFTWSYPGHIGKTVKI 139
            LELY NNITGPIPS+LGNLT+LVSLDLYLNSF+   P  +GK  K+
Sbjct:   98 LELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKL 143          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.269e-55
Identity = 124/224 (55.36%), Postives = 136/224 (60.71%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            GPIP TLG                G IP SLT + +LQVLDLSNN L+G  P NGSFSLFTPISFAN      P +  P                        N                          WWR++KPQ+ FFDVPAEEDP  HLGQLKRFSLRELQVA+D+FSNKNILGRGGFGKVYKGRLADG+LVAVKRLKEERT GGELQFQTEV+MI+MA
Sbjct:  130 GPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLTPLPASPPP------------PISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAWWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMA 341          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.509e-54
Identity = 123/224 (54.91%), Postives = 137/224 (61.16%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            GPIP +LG                G IPM+LT++  LQVLD+SNNRLSG  P NGSFSLFTPISFANN      +T  P                       G                           WW +RKPQ+ FFDVPAEEDP  HLGQLKRF+LREL VATD+FSNKN+LGRGGFGKVYKGRLADG+LVAVKRLKEERT GGELQFQTEV+MI+MA
Sbjct:  137 GPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIPVNGSFSLFTPISFANN-----SLTDLP--------EPPPTSTSPTPPPPSGGQMTAAIAGGVAAGAALLFAVPAIAFAWWLRRKPQDHFFDVPAEEDPEVHLGQLKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMA 346          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.908e-42
Identity = 108/224 (48.21%), Postives = 123/224 (54.91%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            GPIP +LG                G IP SLT +  L VLD+SNNRLSG  P NGSFS FT +SFANN     P +  P                       G S                         WW +RK Q  F DVPAEEDP  +LGQ KRFSLREL VAT+ FS +N+LG+G FG +YKGRLAD +LVAVKRL EERT GGELQFQTEV+MI+MA
Sbjct:  132 GPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFTSMSFANNKLRPRPASPSPSPS--------------------GTSAAIVVGVAAGAALLFALA-------WWLRRKLQGHFLDVPAEEDPEVYLGQFKRFSLRELLVATEKFSKRNVLGKGRFGILYKGRLADDTLVAVKRLNEERTKGGELQFQTEVEMISMA 327          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.307e-22
Identity = 82/230 (35.65%), Postives = 106/230 (46.09%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISF---ANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKP---QEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            G IP T+G                G IP SLT + +L  L L +N LSG  P     SLF    +   +NNL+ CG     PC                       +S                         + + R     ++ F DV  E D     GQLKRF+ RELQ+ATD+FS KN+LG+GGFGKVYKG L D + VAVKRL +  +PGG+  FQ EV+MI++A
Sbjct:  132 GRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQ----SLFEIPKYNFTSNNLN-CGGRQPHPCVSAVAHSGD--------------SSKPKTGIIAGVVAGVTVVLFGILLFLFCKDRHKGYRRDVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVA 342          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.815e-20
Identity = 75/224 (33.48%), Postives = 97/224 (43.30%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPDNGSFSLFTPISFANNLDLCGPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVPAEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            G IP +LG                G +P  +  +S L  LDLS N LSG  P+  +           N  LCGP +   C                       +S                         W R R  +        ++D    +G LKRFS RE+Q AT +FS KNILG+GGFG VYKG L +G++VAVKRLK+     GE+QFQTEV+MI +A
Sbjct:  141 GEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTPNISA----KDYRIVGNAFLCGPASQELCSDATPVRNATGLSEKDNSKH---HSLVLSFAFGIVVAFIISLMFLFFWVLWHRSRLSRSH-----VQQDYEFEIGHLKRFSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDP-IYTGEVQFQTEVEMIGLA 351          
BLAST of CF835012 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 70/230 (30.43%), Postives = 104/230 (45.22%), Query Frame = 3
Query:  102 GPIPDTLGXXXXXXXXXXXXXXXXGPIPMSLTNISSLQVLDLSNNRLSGVDPD--NGSFSLF-TPISFANNL-DLC-GPVTGRPCXXXXXXXXXXXXXXXXXXXXXXGNSXXXXXXXXXXXXXXXXXXXXXXXXXWWRQRKPQEFFFDVP-AEEDP*GHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVQMITMA 773
            G IP ++                 GP P SL+ I  L  LDLS N L G  P     +F++   P+   N+L ++C G ++  P                       G                           W+R+++ +     +   +E+    LG L+ F+ REL VATD FS+K+ILG GGFG VY+G+  DG++VAVKRLK+     G  QF+TE++MI++A
Sbjct:  136 GEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPKFPARTFNVAGNPLICKNSLPEICSGSISASPLSVSLRSSS--------------GRRTNILAVALGVSLGFAVSVILSLGFIWYRKKQRRLTMLRISDKQEEGLLGLGNLRSFTFRELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLA 351          
The following BLAST results are available for this feature:
BLAST of CF835012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SERK2_ARATH2.183e-7466.07Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK1_ARATH2.114e-6962.05Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH2.269e-5555.36BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK4_ARATH2.509e-5454.91Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK5_ARATH4.908e-4248.21Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
Y5129_ARATH3.307e-2235.65Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH1.815e-2033.48Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH4.942e-1830.43Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06I10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835012 ID=CF835012; Name=CF835012; organism=Citrus sinensis; type=EST; length=778bp
TTTGGAACTCTACATCAATAACATAACTGGACCAATTCCTAGTGACCTTG
GGAATTTGACTAGCTTGGTGAGCTTGGATCTCTACTTGAACAGTTTCACC
TGGTCCTATCCCGGACACATTGGGAAAACTGTCAAAATTGCGGTTCCTCC
GGCTTAACAACAACAGTCTCTCGGGTCCAATTCCTATGTCATTGACTAAT
ATCTCCTCTCTTCAAGTATTGGATCTATCAAACAATCGGCTTTCTGGGGT
GGATCCAGACAATGGCTCCTTCTCATTATTTACTCCCATCAGTTTTGCTA
ACAACTTGGATCTATGTGGGCCAGTTACCGGGCGCCCCTGCCCAGGATCT
CCTCCATTTTCTCCTCCTCCTCCATTCATCCCACCACCCCCAATTTCTTC
ACCAGGGGGGAATAGTGCTACTGGAGCAATTGCTGGAGGTGTGGCTGCTG
GTGCTGCCTTATTGTTTGCTGCTCCTGCTATAGCATTTGCATGGTGGCGT
CAGAGAAAACCTCAAGAATTTTTCTTTGATGTACCTGCTGAAGAGGATCC
CTAAGGTCATCTTGGGCAGCTTAAAAGATTTTCACTGCGAGAATTACAAG
TTGCAACAGATAGTTTTAGCAATAAAAACATTCTGGGTAGAGGTGGGTTC
GGTAAGGTCTACAAAGGACGCCTGGCAGATGGTTCACTGGTAGCTGTAAA
AAGATTGAAAGAAGAGCGTACTCCTGGCGGGGAGCTGCAGTTTCAGACTG
AAGTACAGATGATCACTATGGCTGAACA
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