CF835016

Overview
NameCF835016
Unique NameCF835016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:324..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.531e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G+KFADENF+KKH GPGILSMANAGP T GSQFF+CTAKTEWLDGK VVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:   87 GAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.698e-37
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G+KF DENF+KKH GPG+LSMANAGPGT GSQFF+CT KT WLDGK VVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQLS
Sbjct:   65 GAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.484e-36
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G+KF DENFVKKH GPGILSMANAGPGT GSQFF+CTAKTEWL+GK VVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:   87 GAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.256e-35
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            GSKF DENF +KH GPGILSMANAG  T GSQFF+CT KT+WLDGK VVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:   87 GSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.654e-35
Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G+KFADENF+K+H GPGILSMANAG GT GSQFF+CT KTEWLDGK VVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:   87 GAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.654e-35
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            GSKF DENF+KKH GPGILSMANAG  T GSQFF+CT KT WLDGK VVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:   88 GSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.063e-34
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G+KF DENF +KH GPGILSMANAG  T GSQFF+CT KT+WLDGK VVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:   88 GAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            G+KF DENF+KKH G GILSMAN+GP T GSQFF+CT KT WLDGK VVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:   87 GAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.620e-33
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = -2
Query:  222 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 476
            G KF DENFVKKH GPGILSM NAG  T GSQFF+CT KT WLDGK VVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:   87 GMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of CF835016 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.896e-32
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = -2
Query:  219 GSKFADENFVKKHPGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKPVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 476
            GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGK VVFG V EGMDVVK IE  GS SGRT+K +VI DCGQLS
Sbjct:  122 GSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of CF835016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYPH_CATRO3.531e-3887.21Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE8.698e-3782.56Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC1.484e-3684.71Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP18C_ARATH1.256e-3581.40Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_LUPLU3.654e-3577.91Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH3.654e-3580.23Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH1.063e-3477.91Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18D_ARATH2.005e-3376.74Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA7.620e-3378.82Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_HUMAN2.896e-3274.42Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835016 ID=CF835016; Name=CF835016; organism=Citrus sinensis; type=EST; length=477bp
TATTTAAAACCCCTAAAGGCTCCAGGGACATAAAAAACAGGTGATCAAGA
ACCCCTTACGGAGACCCGATCCGACCCGAACAAGGAACGGAGGAGGAAAA
TTAGATAAAGATTAAAAGTCCTACAGACACGCCCACGTAATAATAGATAA
CATAATCATCATCACGATCGGGATCAGACGGCTCGTGATGATGGCGATCA
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGGGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCGGTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGGGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCG
back to top