CF835116

Overview
NameCF835116
Unique NameCF835116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835116_ssr530 microsatellite CF835116_ssr530:530..541. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:555..1144. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.496e-51
Identity = 104/116 (89.66%), Postives = 108/116 (93.10%), Query Frame = -3 
Query:  242 KPKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPK+AA+GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   22 KPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 2.266e-50
Identity = 106/118 (89.83%), Postives = 108/118 (91.53%), Query Frame = -3 
Query:  242 KPKAGKKLPKE--AASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKE  AA+GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   30 KPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 197.208 bits (500), Expect = 5.048e-50
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = -3 
Query:  242 KPKAGKKLPKEA-ASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKEA A GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 2.505e-49
Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = -3 
Query:  242 KPKAGKKLPKEAASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPK+A   D       KSIETYKIYIFKVLKQVHPDIGISSK+MGIM SFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   30 KPKAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 3.272e-49
Identity = 103/118 (87.29%), Postives = 108/118 (91.53%), Query Frame = -3 
Query:  242 KPKAGKKLPKE--AASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKE  +A+G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   31 KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 4.274e-49
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = -3 
Query:  242 KPKAGKKLPKEA-ASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKEA A GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 4.274e-49
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = -3 
Query:  242 KPKAGKKLPKEA-ASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKEA A GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.243e-48
Identity = 103/118 (87.29%), Postives = 106/118 (89.83%), Query Frame = -3 
Query:  242 KPKAGKKLPKEAASG--DXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKEA +G  +       KS ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 KPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 3.618e-48
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = -3 
Query:  242 KPKAGKKLPKE-AASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKE A +GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   29 KPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF835116 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 4.725e-48
Identity = 101/118 (85.59%), Postives = 106/118 (89.83%), Query Frame = -3 
Query:  242 KPKAGKKLPKE--AASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMTSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 589
            KPKAGKKLPKE  +A+G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIM SFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   31 KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148
The following BLAST results are available for this feature:
BLAST of CF835116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3_SOLLC3.496e-5189.66Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B_GOSHI2.266e-5089.83Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B11_ARATH5.048e-5089.74Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B_CAPAN2.505e-4987.93Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B1_MEDTR3.272e-4987.29Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B7_ARATH4.274e-4988.03Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH4.274e-4988.03Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B3_ARATH1.243e-4887.29Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B10_ARATH3.618e-4886.32Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_MEDTR4.725e-4885.59Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835116 ID=CF835116; Name=CF835116; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCGAAATATATTTCATTTTCATATTCTACCCTAT
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCCTAGTACATCCAA
ACAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACG
ACTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACA
TAACACCGGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGT
AAACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCT
CACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATC
GTCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTT
CTCGAAAATATCGTTGATGAAACTGGTCATGATTCCCATGGCCTTGCTCG
AGATTCCGATATCGGGATGTACCTGCTTCAGGACTTTGAAAATGTAAATC
TTGTACGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGA
GGCGGCTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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