CF835217

Overview
NameCF835217
Unique NameCF835217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.778e-42
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = 2
Query:    2 ALNYL*NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            ALN   +EK  ++SIFQ I AFEEELK VLPKEVE+AR  VE+G+P+IPNRIKECRSYPLY+ VREELG+  LTGEKV SPGE+FDKVFTAMC+GKIIDP+L+CL  WNGA
Sbjct:  301 ALNNGESEKNGSTSIFQKIGAFEEELKAVLPKEVESARDGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGA 411          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 5.174e-42
Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = 2
Query:   20 NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            +EK A +SIF  I AFEEELK VLPKEVE AR   +NG+  IPNRIKECRSYPLYR VREELG+  LTGEKVTSPGEEFDKVFTA+C+GKIIDPM+ECL EWNGA
Sbjct:  616 SEKNAVTSIFHKIGAFEEELKAVLPKEVEAARAAYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGA 720          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 2
Query:   20 NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            NEK  N+SIFQ IA FEEELKT+LPKEVE+ R   E+G   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  397 NEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.825e-42
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 2
Query:   20 NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            NEK ANSSIFQ I AFE ELK VLPKEVE+AR ++ENG+P I NRIKECRSYPLYR VREELG+  LTGEKV SPGEE DKVFTAMC G+IID +LECL+EWNGA
Sbjct:  603 NEKNANSSIFQKILAFEGELKAVLPKEVESARISLENGNPAIANRIKECRSYPLYRFVREELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGA 707          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.153e-41
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 2
Query:   23 EKTANS--SIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            EK  NS  SIFQ I +FEEELKT+LPKEVE+AR  VENG+P IPNRIKECRSYPLY+ VREELG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GA
Sbjct:  600 EKVRNSTTSIFQKIGSFEEELKTLLPKEVESARLEVENGNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGA 705          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.505e-41
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = 2
Query:   23 EKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            EK + +SIFQ I AFE+ELKT+LPKEVE AR  +E+G+  IPNRIKECRSYPLY++VRE++G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGA
Sbjct:  612 EKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGA 715          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.505e-41
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 ALNYL*NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            A+N   +EK  NSSIFQ I AFE+ELK VLPKEVE+AR  +E+G+P IPNRI ECRSYPLYR VR+ELG+  LTGEKV SPGEE DKVFTAMC G+IIDPMLECL+ WNGA
Sbjct:  600 AMNNGESEKNVNSSIFQKIGAFEDELKAVLPKEVESARAALESGNPAIPNRITECRSYPLYRFVRKELGTELLTGEKVRSPGEECDKVFTAMCNGQIIDPMLECLKSWNGA 710          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.568e-41
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 2
Query:   20 NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            NEK  N+SIFQ I  FEEELKT+LPKEVE AR   ENG   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGA
Sbjct:  606 NEKNVNTSIFQKITTFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGA 710          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.568e-41
Identity = 76/104 (73.08%), Postives = 92/104 (88.46%), Query Frame = 2
Query:   23 EKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            E  + +SIFQ I +FEEELKT+LPKEVE+AR  VENG+P +PNRIKECRSYPLY+ VREELG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGA
Sbjct:  574 ETNSTTSIFQKIRSFEEELKTLLPKEVESARLEVENGNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGA 677          
BLAST of CF835217 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.380e-41
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 2
Query:   20 NEKTANSSIFQNIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 334
            +EK  NSSIFQ I AFE+ELK VLPKEVE+AR  VE+G+P IPNRI ECRSYPLYRLVR+E+G+  LTGEKV SPGEE DKVFTA C G+IIDP+LECL+ WNGA
Sbjct:  612 SEKNLNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGA 716          
The following BLAST results are available for this feature:
BLAST of CF835217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PALY_VITVI1.778e-4273.87Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL1_ARATH5.174e-4277.14Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PAL1_PHAVU6.757e-4275.24Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL3_TOBAC8.825e-4278.10Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL2_POPKI1.153e-4176.42Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PALY_CITLI1.505e-4174.04Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL1_TOBAC1.505e-4172.97Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_STYHU2.568e-4175.24Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_POPKI2.568e-4173.08Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PAL5_SOLLC4.380e-4174.29Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835217 ID=CF835217; Name=CF835217; organism=Citrus sinensis; type=EST; length=528bp
TGCACTGAACTACCTTTAGAACGAGAAGACTGCCAACTCTTCAATCTTCC
AGAACATTGCAGCCTTTGAGGAGGAATTGAAAACCGTTTTGCCCAAAGAA
GTTGAGAACGCCAGGCAGACTGTTGAGAATGGAAGTCCAACAATTCCCAA
CAGGATCAAAGAATGCAGGTCTTACCCTTTGTACAGGTTAGTGAGGGAGG
AGCTCGGGTCTAATTTTCTAACAGGGGAAAAAGTTACATCGCCCGGCGAG
GAATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCC
AATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATTTGTT
AGTTGTTTTTATTTTGTTTAATAACACGGTCTTCAATCCCTTGTGTTCTT
GTGTTCATAGAATTTGCCCATGCGAGTCAGTGGTACAAATTCATCTGTAA
TATTTCAATCACTTCTATTGGTTTTTTCATATAAGGTTATAAGACTTATT
GTCCTTTATTTTAAAAAAAAAAAAAAAA
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