CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.290e-64
Identity = 124/134 (92.54%), Postives = 124/134 (92.54%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSI WIAHPGGPAILDQVES         KATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.761e-59
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+ WIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  263 LREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.923e-59
Identity = 113/134 (84.33%), Postives = 117/134 (87.31%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSI WIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  260 LREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.923e-59
Identity = 111/131 (84.73%), Postives = 117/131 (89.31%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+ WIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.923e-59
Identity = 113/134 (84.33%), Postives = 117/134 (87.31%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSI WIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  260 LREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.321e-58
Identity = 112/134 (83.58%), Postives = 115/134 (85.82%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSI WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKK  EE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  260 LREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.665e-58
Identity = 109/132 (82.58%), Postives = 117/132 (88.64%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+ WIAHPGGPAILDQVES         +ATR VLSEYGNMSSACVLFILDEMR+ S+E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  258 LREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.663e-58
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.663e-58
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.262e-57
Identity = 109/132 (82.58%), Postives = 115/132 (87.12%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          ++TRQVLSEYGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSVP+
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLKEAFDPLGISDWNSVFWIAHPGGPAILDQVEEKLGLKPEKLRSTRQVLSEYGNMSSACVLFILDEMRKSSAKEGMSTTGEGLDWGVLFGFGPGLTVETVVLHSVPL 389          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI5.290e-6492.54Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR1.761e-5985.50Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_RUTGR3.923e-5984.33Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_DAUCA3.923e-5984.73Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_RUTGR3.923e-5984.33Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS3_RUTGR3.321e-5883.58Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_BETVE5.665e-5882.58Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_ORYSJ9.663e-5880.60Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI9.663e-5880.60Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHSY_ANTMA1.262e-5782.58Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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