CF835339

Overview
NameCF835339
Unique NameCF835339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1849 contig Csv1_Contig1849:327..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.760e-59
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            +DY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G  DI+NNVLKGAPHPPS+LM D WTKPYSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  906 IDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.094e-58
Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            MDY FHGPTMSWPV GTLMIEPTESESK ELDR+CDALISIR+EIA++E G AD+HNNVLKGAPHPPSLLM D WTKPYSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct:  927 MDYGFHGPTMSWPVAGTLMIEPTESESKAELDRFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.437e-58
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            MDY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEIAQIE G AD+ NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  909 MDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.063e-57
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            MDY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIREEI+QIE G AD +NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  915 MDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.636e-56
Identity = 98/118 (83.05%), Postives = 105/118 (88.98%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            +DY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D++NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  908 IDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.132e-55
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            +DY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  905 IDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.132e-55
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            +DY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  905 IDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.478e-55
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            +DY FHGPTMSWPVPGTLMIEPTESESK ELDR+CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  905 IDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.414e-43
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 355
            MDY FH PT+SWPV GT+M+EPTESESK+ELDR+CDALI+IR+EIA+IE GK D  +NVLK APH    L+   W  PYSRE AAYPA W R  KFWPA GR+D  +GDRN +C+ LP
Sbjct:  856 MDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLP 973          
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.435e-42
Identity = 77/115 (66.96%), Postives = 90/115 (78.26%), Query Frame = 2
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 346
            MDY FH PT+SWPVPGTLMIEPTESE+K ELDR+C+A+I+IR EIA+IE G +D   N LK APHP  +L  + W  PYSRE AAYPA WLR  KFWPA  R+DN YGDR+L+CT
Sbjct:  833 MDYGFHAPTVSWPVPGTLMIEPTESETKAELDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYGDRHLVCT 947          
The following BLAST results are available for this feature:
BLAST of CF835339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GCSP_SOLTU3.760e-5988.14Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA1.094e-5885.59Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH2.437e-5886.44Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH2.063e-5785.59Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR6.636e-5683.05Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN1.132e-5583.05Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR1.132e-5583.05Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR1.478e-5583.05Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_NOSP78.414e-4365.25Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP_THEEB1.435e-4266.96Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835339 ID=CF835339; Name=CF835339; organism=Citrus sinensis; type=EST; length=614bp
TATGGATTATGCATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCA
CACTTATGATTGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGG
TATTGTGATGCTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAA
TGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCAC
CATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTCGAGAATAT
GCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTAC
AGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTGCACCCTTC
TTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTGCTTAGAGT
TGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCATGGAAAAA
TTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATGAATACAGAGC
CTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTATATCAGCTTC
TTTAATAACAATAGTTGCTGATTGCAACTCAGGTACTGCAAATTATCATC
CCCCTTTCTTCTCT
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