CF835350

Overview
NameCF835350
Unique NameCF835350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.768e-55
Identity = 98/118 (83.05%), Postives = 111/118 (94.07%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            ME FP+ID+ KLNG+ER+ TME I DACENWGFFELVNHGISHEL+DTV+RLTKEHY KCM+QRFK+MVA+KGLEAVQSE+NDLDWESTFFLRHLPVSN++EIPDLE D+RKAMKEFA
Sbjct:    1 MEAFPVIDMEKLNGEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEAVQSEINDLDWESTFFLRHLPVSNISEIPDLEQDHRKAMKEFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.194e-52
Identity = 92/118 (77.97%), Postives = 109/118 (92.37%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII+L KLNG ER ATMEMI DACENWGFFELVNHGI HE++DTV++LTK HY KCM+QRFK++VASKGLEAVQ+EV DLDWESTFFLRHLPVSN++E+PDL+D+YR+ M++FA
Sbjct:    1 MENFPIINLEKLNGSERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.336e-52
Identity = 93/137 (67.88%), Postives = 113/137 (82.48%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVXXXXXXXXXXXXXXXNLG 641
            MENFPI+D+ KLN ++R +TME+I DACENWGFFE VNHGIS E++DTV++LTKEHY KCM+QRFK+MVA+KGLE VQSE++DLDWESTFFLRHLPVS+++EIPDL+DDYRK MKEFA+               NLG
Sbjct:    1 MENFPIVDMGKLNTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFKEMVATKGLECVQSEIDDLDWESTFFLRHLPVSSISEIPDLDDDYRKVMKEFALKLEELAEELLDLLCENLG 137          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.168e-51
Identity = 90/118 (76.27%), Postives = 107/118 (90.68%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII+L KLNG ER+ TMEMI DACENWGFFELVNHGI HE++DTV+++TK HY KCM+QRFK++VASKGLEAVQ+EV DLDWESTFFLRHLPVSN+ E+PDL+D YR+ M++FA
Sbjct:    1 MENFPIINLEKLNGSERADTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNICEVPDLDDQYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.403e-51
Identity = 88/118 (74.58%), Postives = 109/118 (92.37%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII+L KLNGDER+ TMEMI DACENWGFFELVNHGI HE++DTV+++TK HY KCM+QRFK++VASKGLEAVQ+EV DLDWESTFFLRHLP SN++++PDL+++YR+ M++FA
Sbjct:    1 MENFPIINLEKLNGDERANTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.216e-51
Identity = 88/118 (74.58%), Postives = 108/118 (91.53%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII+L  LNGDER+ TMEMI DACENWGFFELVNHGI HE++DTV++LTK HY KCM+QRFK++VASKGLEAVQ+EV DLDWESTFFLRHLP SN++++PDL+++YR+ M++FA
Sbjct:    1 MENFPIINLENLNGDERAKTMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.574e-50
Identity = 89/118 (75.42%), Postives = 106/118 (89.83%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII+L  L G ER ATMEMI DACENWGFFELVNHGI HE++DTV++ TK HY KCM+QRFK++VASKGLEAVQ+EV DLDWESTFFLRHLPVSN++E+PDL+D+YR+ M++FA
Sbjct:    1 MENFPIINLENLCGAERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.019e-49
Identity = 91/137 (66.42%), Postives = 112/137 (81.75%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVXXXXXXXXXXXXXXXNLG 641
            M  FP++DLS +NG+ER+AT+E INDACENWGFFELVNHG+S ELLDTV+++TK+HY K M+QRFK+MVA+KGL+ VQSE++DLDWESTFFLRHLP SN++EIPDLE++YRK MKEFAV               NLG
Sbjct:    1 MATFPVVDLSLVNGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEMVAAKGLDDVQSEIHDLDWESTFFLRHLPSSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLG 137          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.270e-49
Identity = 91/137 (66.42%), Postives = 110/137 (80.29%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVXXXXXXXXXXXXXXXNLG 641
            M  FP++D+  +NG+ER+AT+E INDACENWGFFELVNHGIS ELLDTV+++ K+HY K M+QRFK+MVA+KGLEAVQSE++ LDWESTFFLRHLP SN++EIPDLE+DYRK MKEFAV               NLG
Sbjct:    1 MATFPVVDMDLINGEERAATLEKINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAAKGLEAVQSEIHYLDWESTFFLRHLPSSNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLG 137          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.605e-49
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVXXXXXXXXXXXXXXXNLG 641
            MENFPII+L  LNG+ R ATME I DACENWGFFELV+HGI  E LDTV+RLTKEHY +C++QRFK++VASKGLEAV++EVND+DWESTF+LRHLP SN++E+PDLED YR  MKEFA+               NLG
Sbjct:    1 MENFPIINLEGLNGEGRKATMEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLG 137          
The following BLAST results are available for this feature:
BLAST of CF835350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO_ACTDE2.768e-5583.051-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO3_PETHY2.194e-5277.971-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO_PEA8.336e-5267.881-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_TOBAC3.168e-5176.271-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO1_SOLLC5.403e-5174.581-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO4_SOLLC9.216e-5174.581-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO4_PETHY4.574e-5075.421-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO1_MALDO1.019e-4966.421-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO2_MALDO2.270e-4966.421-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO_PRUMU6.605e-4966.421-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835350 ID=CF835350; Name=CF835350; organism=Citrus sinensis; type=EST; length=641bp
CTAGTCTCGAGCTTTTTTTTTTTTTTTTAATAATTAGTATGGAAGATGGT
GATGGGGTTTAATCAGCAAGCACGAGAAGGAATCGGGCCCCGTCGTAGAC
AAACGCAATGGTATTGGCGTCCGAAAATGAAATGAAAATGAAATGAAAAT
GAAAATGGCTGGCTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGA
TTGTGGGAGTTAAGAAACAAACAAATAACAATGGAGAATTTTCCAATTAT
TGACTTGTCAAAGCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGA
TCAATGATGCCTGTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGG
ATATCACATGAGCTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTA
CGGGAAGTGTATGGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCC
TTGAAGCTGTTCAGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTC
TTCTTGCGCCACCTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGA
AGATGATTACAGGAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAANG
TTGCTGAGCAACTTCTGGAATTGTTGTGTGAGAATCTTGGG
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