CF835361

Overview
NameCF835361
Unique NameCF835361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:159..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.047e-56
Identity = 109/189 (57.67%), Postives = 133/189 (70.37%), Query Frame = -1
Query:  282 RIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 848
            RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:   20 RIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.814e-30
Identity = 80/203 (39.41%), Postives = 108/203 (53.20%), Query Frame = -1
Query:  285 RIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVH------YAAAE-------SKHLLVTN--SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFK 848
            ++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP           + +  + + H P L KR + Q  ++ + A + A  + SE Q  G            Y+  E       SK+  V    +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+
Sbjct:   27 QVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 78/204 (38.24%), Postives = 106/204 (51.96%), Query Frame = -1
Query:  282 AAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG-----------------PRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 842
            AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP           D +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   31 AAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 65/174 (37.36%), Postives = 87/174 (50.00%), Query Frame = -1
Query:  288 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 809
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP            E     D H P   K+V+SQ           A+++VSE +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = -1
Query:  288 AAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 842
            AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   44 AAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = -1
Query:  288 AAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 842
            AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   44 AAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = -1
Query:  288 RIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 848
            R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P           D +    D   PP+ K+V++Q +S+ + A +   ++ S     G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   17 RAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CF835361 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 56/194 (28.87%), Postives = 91/194 (46.91%), Query Frame = -1
Query:  282 RIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQ-----KAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 848
            ++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP           D+     + + P L K+ +SQ  ++     +       +++    +     AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y    YLP++PI+ I+   +Q
Sbjct:   48 QVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229          
The following BLAST results are available for this feature:
BLAST of CF835361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH4.047e-5657.67REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI3.814e-3039.41Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH3.341e-2638.24REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_PHAVU2.927e-2237.36Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y5513_ORYSJ8.517e-2235.05REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI8.517e-2235.05REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR3.956e-1933.16Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH1.662e-1728.87REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01B21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835361 ID=CF835361; Name=CF835361; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTAACAGAATTTATGAACCATTTATCTCCCTTCTCAT
ATGGGGAAAACCAAGTCTTAAAGGTCATTTACAGATTACAAACCATACTG
CCACTACCCGGCCACACCTTCAAGCCTAGAATTTTGCAAACCAGACCACT
AGATGAAGCAAACTCATCAGACAAAAAGTAAATTCTTAGTCAGAATCTGA
GCTTGAATCCTTTTCCTTTGCATCTTCTTTCTTTGGAGCATCTTCTTTCT
CTGGAGCATCTTCTTTCTTGGGAGCTTCACTCTGCTTAAAAGCTTTGGCT
ATGTCATCAATGGGAACCAAAGGAAGATAGCCAAAGACTGTGTAACCCTT
CTTCGTCATCTCCACGACAAGATGGTTATACTTCTTGGACCACTGTGCAG
CTGTGGGAACAGCCATATCTGCCATTGTGTGGAACAATGCATAGTGGTTT
AGTTTATACCATGCTTTCACGGAATTTGTTACCAGAAGGTGTTTAGACTC
AGCAGCAGCATAATGGACAGCTGCTCGAGGCCCCCCGGTTTGGGCCTCAC
TCACAAGATTTTGAGCTTTCTGTGATGCTGTTTCAATTAGACTATGTACT
TGGCTGGCAACCCGCTTGGCCAAAGGGGGAGCGTGCTCGTCAAACTTGCG
TGAAGCCTCATCCACCTTCTTATCAAGAAAAACGAGGAGATCATCAGGCA
CGCCCTTGAATTTCTGATAAACAGGTCCCACGACGGCAGTCACGGCGCTT
TCGACAGTCCCAACCGGTGAGCGTAGCGGCCCCGAGTTGCGTTTTGCGTA
GTCGTACAAACTCGACACGCACACCAGAGCCTGAATCGCGGCTATCCT
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