CF835473

Overview
NameCF835473
Unique NameCF835473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835473_ssr382 microsatellite CF835473_ssr382:382..393. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:57..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.536e-47
Identity = 92/105 (87.62%), Postives = 100/105 (95.24%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVV 148
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 6.454e-46
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 157
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 6.454e-46
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 6.454e-46
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 4.184e-45
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.488e-42
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+I
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSII 148
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.943e-42
Identity = 84/105 (80.00%), Postives = 97/105 (92.38%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVV 149
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV 163
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV 163
[Close]
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 9.645e-42
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 3 
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++
Sbjct:   59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV 163
The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS24_ARATH1.536e-4787.6240S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH6.454e-4687.6240S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH6.454e-4687.6240S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH6.454e-4687.6240S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME4.184e-4582.8640S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU1.488e-4280.9540S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA1.943e-4280.0040S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT5.654e-4279.0540S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE5.654e-4279.0540S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN9.645e-4279.0540S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bp
TTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAACACACAAG
AACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGG
CTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCC
GCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTC
GGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCT
CCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTATCGGCC
ACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACA
CGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACAC
GGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTG
CCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
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