CF835517

Overview
NameCF835517
Unique NameCF835517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835517_ssr20 microsatellite CF835517_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12955 contig Csv1_Contig12955:18..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.113e-19
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = -3
Query:   64 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRIG 261
            CP KSSWP LVG  G VA AIIE++NP V A++L EGTPVTKD+R +RVR+WVNK+G V   PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.754e-16
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = -3
Query:   67 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRI 261
            CP K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +TKD+R DRV V VN  G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.322e-15
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -3
Query:   64 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRIG 261
            C  K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V   P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = -3
Query:   64 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRIG 270
            A  CP K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V  VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = -3
Query:   67 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRI 294
            DGP ++  +  F+    C  K  WPEL+G     A  IIEKENP +  I +LL G+PVTKD+R DRVR++VN  G V  +PR+
Sbjct:   28 DGPEVIKLLKEFESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = -3
Query:   67 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRI 270
            A +CP K  WPELVG+ G  AAAIIE+ENP V +IV  E +  TKD+R DRV V V+  G V   PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = -3
Query:   67 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRI 294
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT DYR +RVR++ N  G V  +PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CF835517 vs. ExPASy Swiss-Prot
Match: ICI1_SOLTU (Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = -3
Query:   64 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTKDYRIDRVRVWVNKKGKVRGVPRIG 294
            DGP ++  +  F C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT D R DRVR++ N  G V  +P +G
Sbjct:   28 DGPEVIQLLKEFQCKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYVVDIPVVG 107          
The following BLAST results are available for this feature:
BLAST of CF835517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ITH5_CUCMA1.113e-1966.67Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
ICI_LINUS9.754e-1661.54Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
BGIA_MOMCH6.322e-1554.55Glu S.griseus protease inhibitor OS=Momordica char... [more]
HPI_HEVBR2.402e-1455.07Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ICI1_SOLPE3.835e-1246.99Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ATSI_AMACA6.542e-1254.41Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICID_SOLTU1.904e-1144.30Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLTU9.447e-1143.75Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01G07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835517 ID=CF835517; Name=CF835517; organism=Citrus sinensis; type=EST; length=458bp
TTTTTTTTTTTTTTTTTGCTTTATTTATTTATTAGTTATGACCTTTTAGA
TGGAGGAAATTCAACCAATACGAGGAACCCCCCTCACCTTCCCTTTCTTG
TTGACCCAAACACGAACCCTGTCAATCCTATAGTCCTTAGTAACTGGAGT
TCCCTCAAGTAATACGATTGCATGAACACAAGGATTCTCTTTCTCTATAA
TAGCAGCAGCAACCTCCCCGTTTTTACCAACCAGCTCTGGCCATGAGCTC
TTGCGTGGACAATCAAATGCAGACATGACTAGGTTTGGTCCATCTTCCAC
AACTCCTTTCAATGCAGATACGATGACTTCAGAGCCAAGCTCCTTGCCAT
CGGTCAGGCAAGGCTCGTGACGAGCGGCCAAAGACGGTTTTGCGGCGAAG
GCCAAGAGAAAGAAGAAAAGGGCGAGTGCTGGTAATGAACTCTTCATTGC
TAATAATT
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