CF835534

Overview
NameCF835534
Unique NameCF835534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_DICDI (Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.937e-32
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = -2
Query:   40 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAICPFEGAPEEFDQTIFPV 342
            V SDP +Y+EA LGKSN+ YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T     YG+++KY+ERV LIYDG+HYDAL+IC  +  PE+FD T F V
Sbjct:  162 VKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQLMYCYGEDRKYTERVYLIYDGIHYDALSICLTKNGPEDFDITRFSV 262          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_DROME (Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.096e-25
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = -2
Query:   19 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAICPFEGAPEEFDQTIFPVQKVQVHR 342
            VA+DP  Y++A LGKSN EYC+WIQ  + WGGAIE+SIL++YYG EI   DIQ    + +G++K +  RV L++DG+HYD L +   E +P     TIFPV+++ V++
Sbjct:  190 VAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAIINRFGEDKNFGLRVFLLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQ 294          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_DANRE (Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = -2
Query:   46 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL-AICPFEGAPEEFDQTIF 342
            VASDP  YSEA LGK+N+EYC+WI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L  + P    P    QT+F
Sbjct:  143 VASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVRVDRFGEDAGYTKRVLLIYDGIHYDPLQKVLPGSDVPA---QTVF 239          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_MOUSE (Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.839e-24
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASDPV YSEA LGK+N++YC WI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  185 VASDPVLYSEAILGKTNEDYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPL 266          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_HUMAN (Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.960e-24
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASDP  YSEA LGK+NQEYC WI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  190 VASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPL 271          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_RAT (Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASDP  YSEA LGK+N+EYC WI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  185 VASDPDLYSEAILGKTNEEYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPL 266          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_BOVIN (Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASDP  YSEA LGK+N+EYC WI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  190 VASDPDFYSEAILGKTNEEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPL 271          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_CHICK (Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.785e-23
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASDP  Y EA LGK+N+EYC WI+  E WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  144 VASDPEAYCEAVLGKTNREYCEWIRREETWGGAIEVSILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPL 225          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_DROPS (Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura pseudoobscura GN=GA18292 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = -2
Query:   19 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAICPFEGAPEEFDQTIFPVQKVQVHR 342
            V++D  +Y++A LGKSN +YC+WIQ  + WGGAIE+SIL++YYG EI   DIQ    + +G++K +  RV L++DG+HYD L +   E        TIFPV+++ V++
Sbjct:  201 VSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAIINRFGEDKNFGLRVFLLFDGIHYDPLYM---ETQQNSVPATIFPVEEMGVYQ 305          
BLAST of CF835534 vs. ExPASy Swiss-Prot
Match: OTU1_XENLA (Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = -2
Query:   97 VASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 342
            VASD   Y +A LGKSN+EYCSWI+  + WGGAIE+SIL+ +Y  EI   D QT R D +G++  Y++RV+LIYDG+HYD L
Sbjct:  146 VASDQSAYCDAVLGKSNEEYCSWIRREDTWGGAIEVSILSKFYQCEICVVDTQTVRIDRFGEDSGYTKRVLLIYDGIHYDPL 227          
The following BLAST results are available for this feature:
BLAST of CF835534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
OTU1_DICDI9.937e-3261.39Ubiquitin thioesterase OTU1 OS=Dictyostelium disco... [more]
OTU1_DROME3.096e-2549.07Ubiquitin thioesterase OTU1 OS=Drosophila melanoga... [more]
OTU1_DANRE3.423e-2453.00Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1... [more]
OTU1_MOUSE5.839e-2458.54Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod... [more]
OTU1_HUMAN9.960e-2459.76Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD... [more]
OTU1_RAT1.699e-2358.54Ubiquitin thioesterase OTU1 OS=Rattus norvegicus G... [more]
OTU1_BOVIN2.219e-2358.54Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 ... [more]
OTU1_CHICK3.785e-2358.54Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YO... [more]
OTU1_DROPS6.456e-2345.37Ubiquitin thioesterase OTU1 OS=Drosophila pseudoob... [more]
OTU1_XENLA1.438e-2257.32Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=y... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835534 ID=CF835534; Name=CF835534; organism=Citrus sinensis; type=EST; length=343bp
ACTAGGCCTTCTGCTGACCCTATGGACCTGCACCTTCTGTACGGGAAATA
TAGTCTGATCAAACTCCTCTGGAGCTCCCTCAAATGGACATATAGCTAAA
GCATCATAATGAAGCCCGTCGTAGATGAGCATAACTCTTTCAGAATACTT
CTTTTCCTGGCCATACAAATCACATCTTGTGGTCTGAATATCATATGCTG
CAATTTCACGTCCATAATAATCTGCTAATATCGAAAGCTCAATGGCACCT
CCCCACTTCTCTGGGTCCTGAATCCAAGAACAATACTCTTGATTTGACTT
TCCAAGAAATGCCTCAGAATATTTTACTGGATCACTTGCTACT
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