CF835560

Overview
NameCF835560
Unique NameCF835560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835560_ssr35 microsatellite CF835560_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835560 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.917e-30
Identity = 78/132 (59.09%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  349 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQ 744
            RV VDEVDFFS+ ++RVS  +  +DD     N V IK E S  +   R+  DVN GL+LLTA NTGSD+STVDDG+S D  D KR KIE  QLQ EL++M  ENQRLRDMLSQ T N+NALQM ++A+M+QQ
Sbjct:   27 RVVVDEVDFFSEKRDRVSRENINDDDDEG--NKVLIKMEGSRVEENDRSR-DVNIGLNLLTA-NTGSDESTVDDGLSMDMED-KRAKIENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVAVMRQQ 153          
BLAST of CF835560 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.034e-25
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 1
Query:  349 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSH-DQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQ 744
            R  V+EVDFF   + R  +S   ++     T+ VH+K+ENS  D    R+   +N GL+LLTA NTGSD+S VDDG+S D  +EKRTK E  QL+ EL++ + +NQRL+ MLSQ TNN+N+LQM ++A+M+QQ
Sbjct:   25 RAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHVKRENSRVDDHDDRSTDHINIGLNLLTA-NTGSDESMVDDGLSVD-MEEKRTKCENAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQ 155          
BLAST of CF835560 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24
Identity = 84/216 (38.89%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  136 MDKGW-GLTLDSDHPIVSNLNFFTSNKPKP-----SLARFRTNRDMXXXXXXXXXXVRMFQLXXXXXXXXXXXXXXXRVAVD-------EVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQ 744
            MD+GW GLTLDS    + N N  +    +      +++R     D            R F +                VA D       EVDFFSD K+RV     REDD         +KKE   D+       DVNTGL+L T  NT SD+S +DDG SS+  D KR K EL +LQ EL++M  +NQ+LR++L+QV+N+Y +LQMH+++LMQQQ
Sbjct:    1 MDRGWSGLTLDSSSLDLLNPNRISHKNHRRFSNPLAMSRIDEEDDQKTRISTNGSEFR-FPVSLSGIRDREDEDFSSGVAGDNDREVPGEVDFFSDKKSRVC----REDDEG-----FRVKKEEQDDRT------DVNTGLNLRTTGNTKSDESMIDDGESSEMED-KRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQ 199          
The following BLAST results are available for this feature:
BLAST of CF835560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRK31_ARATH6.917e-3059.09Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH1.034e-2549.62Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY6_ARATH1.143e-2438.89WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01H17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835560 ID=CF835560; Name=CF835560; organism=Citrus sinensis; type=EST; length=745bp
AGGATACTGGACAAACACAACGTCATTAACCCAACTCTCTCTCTCTCTCT
CGATTCGTTCCACTTTCTCTTCTAAATCTTCCCTTCTTTTGCTTTTGCTT
TTGCTTAATTAACTTTCTTCAATTTAATTATATTTATGGACAAAGGATGG
GGTCTCACACTTGATTCTGATCATCCTATTGTTAGTAATCTGAATTTCTT
CACAAGCAACAAGCCAAAGCCATCATTAGCAAGGTTTAGAACAAACCGTG
ACATGGCTGCTTCTGGTGCTGCTGACTCATCTTCTGTCAGAATGTTTCAG
CTTCCGGCCTCCGACAATAGTAATGCTCCCTCCTCGTCTGATGATAATCG
GGTGGCTGTTGATGAAGTTGACTTCTTTTCCGATGACAAGAACAGGGTTT
CTATCTCTGATCATCGTGAAGATGATCGTAACAAGACAACAAATTCTGTT
CACATCAAGAAAGAGAATTCTCACGACCAACTTCGTCACAGAACTGGCTT
GGATGTTAATACTGGCTTGCATCTACTTACTGCCGCTAACACTGGAAGCG
ATCAATCAACGGTTGATGATGGGGTTTCATCTGATCATGCGGACGAAAAA
CGAACAAAAATTGAGTTGACTCAATTGCAAGTGGAGCTGCAACAAATGAA
TACAGAAAATCAAAGGTTAAGAGACATGCTTAGCCAAGTAACTAACAATT
ACAATGCACTACAGATGCATATTATTGCATTAATGCAACAGCAGC
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