CF835586

Overview
NameCF835586
Unique NameCF835586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8278 contig Csv1_Contig8278:20..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.883e-54
Identity = 120/229 (52.40%), Postives = 139/229 (60.70%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSQTQMPQ 843
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K      ST                           VP                                VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +    PQ
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTD-------------VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQ 217          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43
Identity = 106/229 (46.29%), Postives = 125/229 (54.59%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV-YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSQTQ 834
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML +     G+GS+                            P+                                 YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+  TQ
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQ 226          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.835e-39
Identity = 91/216 (42.13%), Postives = 116/216 (53.70%), Query Frame = 1
Query:  163 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG 810
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G +                           VP                                 YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSD----------------TYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVG 203          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.882e-29
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1
Query:  592 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAAN--SQTQMP 840
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN  +QTQ P
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQP 258          

HSP 2 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 408
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  595 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQA 816
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA 211          

HSP 2 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  163 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 384
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 384
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 408
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G+G++
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86          
The following BLAST results are available for this feature:
BLAST of CF835586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH2.883e-5452.40Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ5.100e-4346.29Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH5.835e-3942.13Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23C_ARATH1.882e-2977.91Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_ARATH1.444e-2164.94Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_RAT1.002e-1448.10UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.002e-1448.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN1.710e-1448.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN2.233e-1446.84UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN1.600e-1241.67UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835586 ID=CF835586; Name=CF835586; organism=Citrus sinensis; type=EST; length=845bp
CTTCTGTATGCTTCTTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTAT
CAATTATAGATAGACATTGAAAACACCTTGCGGATCGGAAAACCAAATAA
AATAGTTGAATTCGAGAAGACCCAACGGAACGTAGAAAAAGAAGAAGATG
ATGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGT
GAAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTC
AAGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGG
AAAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGTAGCTGAAAA
TAGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAACTGGTGAAG
GTTCAACTAGGTCAACTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCA
ACCCCTGCAGCAACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTC
TACAGAGCCTACACCTGCTCCTGCACCTGCTCCTACTCCTGCTCCTGCTT
CTGCTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGG
CATGCTGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCA
GCAGATTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTC
GTGCTCTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTA
TATTCTGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCC
TGGTAATGGACAAGCTGCTAACTCTCAAACTCAGATGCCACAGCC
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