CF835586
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 212.231 bits (539), Expect = 2.883e-54 Identity = 120/229 (52.40%), Postives = 139/229 (60.70%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSQTQMPQ 843 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K ST VP VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A + PQ Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTD-------------VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQ 217
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43 Identity = 106/229 (46.29%), Postives = 125/229 (54.59%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV-YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSQTQ 834 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + G+GS+ P+ YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ TQ Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ-----GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQ 226
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 161.384 bits (407), Expect = 5.835e-39 Identity = 91/216 (42.13%), Postives = 116/216 (53.70%), Query Frame = 1 Query: 163 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG 810 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K + G + VP YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSD----------------TYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVG 203
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.882e-29 Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1 Query: 592 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAAN--SQTQMP 840 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN +QTQ P Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQP 258 HSP 2 Score: 125.176 bits (313), Expect = 4.634e-28 Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 408 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K + S+ Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21 Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 Query: 595 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQA 816 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA 211 HSP 2 Score: 91.2781 bits (225), Expect = 7.416e-18 Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 163 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 384 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 384 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 393 + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12 Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 408 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G+G++ Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86 The following BLAST results are available for this feature:
BLAST of CF835586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835586 ID=CF835586; Name=CF835586; organism=Citrus sinensis; type=EST; length=845bpback to top |