CF835588

Overview
NameCF835588
Unique NameCF835588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835588_ssr134 microsatellite CF835588_ssr134:134..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1115 contig Csv1_Contig1115:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835588 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 64/189 (33.86%), Postives = 79/189 (41.80%), Query Frame = 3 
Query:  231 ALEALNSPTTNTHNHHPFRYEDSWTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALRGHKR 761
            A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQAL GHKR
Sbjct:   23 AAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CF835588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT3.127e-1733.86Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01I10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835588 ID=CF835588; Name=CF835588; organism=Citrus sinensis; type=EST; length=763bp
GTAATCTTTAGTTGACCGACTTCACTTCCCCCCACCAATTCTCCACTCTC
CCCCTCTTCTATATATAAGGCCCCCACCTCACTCACTCTTCCATCATCAT
TTCCATCCATTTGAAATCACCTCTCTTCTCCTGCTCTCTCTCTCTCTCTC
TCTCTCTCTCGAAACTCAACAGATTCAACCACAAGAGTCGAGAATTCACC
TACAAGAAAAGAAAAAAATTCACGACTATGGCTCTAGAAGCTCTAAACTC
TCCTACAACAAACACCCACAATCATCATCCGTTTAGATACGAAGACTCAT
GGACTAAAAGAAGGCGCTCAAAACGACCCCGTACCGACGAGTCCCCACCA
CTGCCACCAGCAGTAGCAGCTCCCACAGAAGAAGAGTACATGGCTCTCTG
TCTCATCATGCTCGCCCGCGGTACCACCACCGCCAACACCGCTCCAGCCG
AAAGAACCCCATCCCTGGCGCCGGAACAGCGGCCGCAGGATCAGTTCCCG
GAGCCGCCAAGTTTGAAACTTTCTTACAAGTGCAGTGTGTGCAACAAGGC
TTTCTCTTCTTACCAGGCCCTTGGTGGGCACAAAGCCAGCCACCGCAAGA
ACGCTGCTGACGCCTCGGCTTCTCCCAACGCCGCAGCCGCCAGTGACGTC
ACCCCACCACCGTCAGCAACGGCGAGCAGCGGAAGCGGCGGTAGGACCCA
CGAGTGCTCTATTTGTCACAAGTCTTTTCCCACTGGACAAGCTCTAAGAG
GCCACAAGCGGTG
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