CF835609

Overview
NameCF835609
Unique NameCF835609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835609 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  165 IFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLDRTSKPLPDYVIAMRA---MEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLRGDDDPIFKLSWMLPSIARDMILLENQLPFFVLWKLFTITKMPNNSN 626
            IF+VP+    LN KAY+PK+++IGPYH+G++ L   + HK R L+  LD   K   +  + ++A   +E++ +  Y   L    D  + MM+LDGCFI+ V    +   +   +DPIF + W+L SI  D++LLENQ+PFFVL  L+  +K+  +S+
Sbjct:   48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMS-GNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD 202          
BLAST of CF835609 vs. ExPASy Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 44/165 (26.67%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  162 NIFKVPDVLRKLNEKAYEPKMLAIGPYHHGKEELSTFEVHKTRYLRELLDR-TSKPLPDYVIAMRAMEERAKNCYGGSLSLETDKFVLMMLLDGCFIVEVIRKFALTRLRGDDDPIFKLSWMLPSIARDMILLENQLPFFVLWKLFTITKMPNNSNDDNFLLMIL 653
            +IF VP  L   +  +Y P  ++IGPYH  K EL   E +K    R++ ++  S    D V  +++ME + + CY   +    +  + +M +D  F++E ++ ++  ++    + +         I RD++++ENQ+P FVL K     ++ +  + D+ LL +L
Sbjct:   44 SIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGH-----NEILRDIMMIENQIPLFVLRKTLEF-QLESTESADDLLLSVL 202          
The following BLAST results are available for this feature:
BLAST of CF835609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3720_ARATH2.470e-2438.85UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
Y3264_ARATH3.132e-1126.67Putative UPF0481 protein At3g02645 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01J02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835609 ID=CF835609; Name=CF835609; organism=Citrus sinensis; type=EST; length=735bp
GGAGTTAGCTCATTCCGCAAAGAAGATCGGAGATTAAGTGAGCAAGGCCA
GGCAGGCAGCCTTTAACAAATCAAGGCATGGCAAGTCCATCAGCTGACAG
AGTACTTGATCTTGTTAAGGAAAAGCTTGATGGTCTAACTGCTACACCAT
CTGATCGGTTCAACATTTTTAAGGTGCCTGATGTACTGCGTAAGTTAAAT
GAAAAGGCTTATGAACCAAAAATGCTAGCAATTGGTCCTTATCATCACGG
TAAAGAAGAATTATCGACCTTTGAGGTGCACAAAACACGCTATCTCAGAG
AACTTCTAGACCGTACGAGCAAGCCTTTGCCAGACTATGTCATAGCCATG
AGGGCAATGGAAGAAAGAGCTAAAAATTGTTATGGAGGGTCCCTAAGTTT
AGAGACAGATAAGTTTGTGCTAATGATGCTTCTCGATGGTTGTTTTATCG
TCGAGGTTATTCGTAAGTTTGCATTGACACGCTTGAGAGGAGATGATGAC
CCAATTTTTAAACTGAGTTGGATGTTACCTTCCATAGCACGAGATATGAT
TTTGCTTGAGAATCAACTTCCATTTTTTGTTCTCTGGAAGTTGTTTACCA
TTACTAAGATGCCTAATAATTCAAATGATGATAACTTTCTTCTCATGATC
CTTCGTTTTTTCAATGGCATATTACCAGGAAAGGGTTGTCGAAGGGATGA
TGTTTATCGAGATAAAGATTATCGCATAAATGAAG
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