CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835635_ssr501 microsatellite CF835635_ssr501:501..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECAC_ARATH (DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana GN=RECA PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPN------QEENILEEF 361
            PYKQAEFEI+FGEGVSKLGC+LDCAE+M++VV+KG+WYSY DQRLGQGR+KALQ+LR+NP LQ+EIEK VR +M DG VH+ + L + S  +      +EE+ L++F
Sbjct:  332 PYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSSASHREEEEEDSLDDF 438          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_NOSP7 (Protein recA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=recA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENI 349
            P++ AEF+IIFG+G+S LGC++D AE   I++RKGAWYSY    + QGRD A++YL + P   EEI+K+VR  +  G+V   + +   S  ++EE +
Sbjct:  257 PFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAEEIKKLVREKLDKGAVVSANSVAKASEEDEEEEV 353          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CYAA5 (Protein recA OS=Cyanothece sp. (strain ATCC 51142) GN=recA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P++ AEF+IIFG+G+S++GCMLD AE  D+V+RKGAWYSY    + QGRD A++YL +NP + E IE+ VR  +  GS+
Sbjct:  258 PFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNISQGRDNAVKYLEENPKIAETIEQQVREKLELGSL 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CYAP8 (Protein recA OS=Cyanothece sp. (strain PCC 8801) GN=recA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P++ AEF+IIFG+G+S++GCMLD AE  D+V RKGAWYSY  + + QGRD A++YL DNP + + IE+ VR  +  GS+   +F  + +  N+EE
Sbjct:  258 PFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENISQGRDNAVKYLEDNPEVADTIERQVREKLELGSL---NFAISQTDDNEEE 349          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SPIPL (Protein recA OS=Spirulina platensis GN=recA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 39/79 (49.37%), Postives = 62/79 (78.48%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P++ AEF+IIFG+G+S +GC++D AE   ++ RKGAWYSY ++ +GQGRD+ + Y+++NP   EEI+K VR+ ++ G+V
Sbjct:  257 PFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGRDRTITYMQENPAFTEEIDKRVRAALAGGAV 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ANASP (Protein recA OS=Anabaena sp. (strain PCC 7120) GN=recA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P++ AEF+IIFG+GVS LGC++D AE   I++RKGAWYSY    + QGRD A++YL + P   E+I++ VR  +  G+V   + +   +  +++E++ EE
Sbjct:  257 PFRIAEFDIIFGKGVSTLGCLVDLAEETGILIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFSEQIKQQVREKLDKGAVVSANSVAKNNEDDEDEDVEEE 356          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM4 (Protein recA OS=Prochlorococcus marinus (strain MIT 9211) GN=recA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQE 340
            P++ AEF+I+FG+G+S +GC+LD AE  +IV RKGAWYSY    +GQGRD  + +L  N   +E+IEK+VR  +++GS    + +R ++  N++
Sbjct:  272 PFRIAEFDILFGKGISTIGCLLDLAEETNIVARKGAWYSYEGDNIGQGRDNTITWLEQNTEAKEKIEKLVRQKLTEGSEVSSNSMRPLTTANRK 365          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CYAP4 (Protein recA OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=recA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P++ AEF+IIFG+G+S+LGC+LD AE   +V RKGAWYSY  + L QGRD  ++Y+ +NP     IE++VR  +  G+V   + +       +EE + EE
Sbjct:  258 PFRVAEFDIIFGKGISRLGCILDMAEETGVVNRKGAWYSYNGENLAQGRDNTIKYMEENPEFARNIEQLVRQKLEMGAVVSANSVAANETDAEEEYVEEE 357          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROMA (Protein recA OS=Prochlorococcus marinus GN=recA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S LGC+LD AE  +IV RKGAWYSY    +GQGRD  + +L +N   +E+IEK+VR  +++GS
Sbjct:  272 PFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGRDNTITWLEENSEAKEKIEKLVRQKLTEGS 349          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_GLOVI (Protein recA OS=Gloeobacter violaceus GN=recA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P+++AEF+IIFG+G+S LGC+LD A  M+IV RKGAWYSYG +RLGQGR+  L  L +N    +EIE  VR  ++ G+
Sbjct:  270 PFRKAEFDIIFGKGISSLGCILDLAVEMEIVERKGAWYSYGSERLGQGRENVLALLEENAAQAQEIEIKVREKIASGA 347          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECAC_ARATH5.610e-3363.55DNA repair protein recA homolog 1, chloroplastic O... [more]
RECA_NOSP71.097e-2045.36Protein recA OS=Nostoc punctiforme (strain ATCC 29... [more]
RECA_CYAA51.097e-2054.43Protein recA OS=Cyanothece sp. (strain ATCC 51142)... [more]
RECA_CYAP81.433e-2049.47Protein recA OS=Cyanothece sp. (strain PCC 8801) G... [more]
RECA_SPIPL4.170e-2049.37Protein recA OS=Spirulina platensis GN=recA PE=3 S... [more]
RECA_ANASP1.585e-1943.00Protein recA OS=Anabaena sp. (strain PCC 7120) GN=... [more]
RECA_PROM42.703e-1944.68Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_CYAP42.703e-1944.00Protein recA OS=Cyanothece sp. (strain PCC 7425 / ... [more]
RECA_PROMA6.022e-1952.56Protein recA OS=Prochlorococcus marinus GN=recA PE... [more]
RECA_GLOVI6.022e-1955.13Protein recA OS=Gloeobacter violaceus GN=recA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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