CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3386 contig Csv1_Contig3386:287..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.507e-63
Identity = 115/125 (92.00%), Postives = 121/125 (96.80%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDN-EGEDY 619
            KDVN AVATIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+N +GEDY
Sbjct:  326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDENDDGEDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.571e-63
Identity = 115/125 (92.00%), Postives = 121/125 (96.80%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 619
            KDVN AVATIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EGEDY
Sbjct:  326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGEDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.727e-63
Identity = 114/125 (91.20%), Postives = 121/125 (96.80%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 619
            KDVN AVATIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.727e-63
Identity = 114/125 (91.20%), Postives = 121/125 (96.80%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 619
            KDVN AVATIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.727e-63
Identity = 115/125 (92.00%), Postives = 120/125 (96.00%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 619
            KDVN AV TIKTKR VQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD ++EGEDY
Sbjct:  326 KDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGEDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.727e-63
Identity = 114/125 (91.20%), Postives = 121/125 (96.80%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDD-NEGEDY 619
            KDVN AVATIKTKR VQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD+ +EG+DY
Sbjct:  326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEGDDY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.848e-62
Identity = 112/125 (89.60%), Postives = 118/125 (94.40%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV-DDDNEGEDY 619
            KDVNTAVA IK KR +QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +G  DDD EG++Y
Sbjct:  326 KDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGGEGAEDDDEEGDEY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.332e-62
Identity = 112/125 (89.60%), Postives = 120/125 (96.00%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 619
            KDVN AV TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD D+EGE+Y
Sbjct:  326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.332e-62
Identity = 112/125 (89.60%), Postives = 120/125 (96.00%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDD-DNEGEDY 619
            KDVN AV TIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+G DD D+EGE+Y
Sbjct:  326 KDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.142e-61
Identity = 110/125 (88.00%), Postives = 120/125 (96.00%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD-DDNEGEDY 619
            KDVN AVATIKTKR +QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+  + +D+EG+DY
Sbjct:  326 KDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDEGDDY 450
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA1_ORYSJ1.507e-6392.00Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA3_ELEIN2.571e-6392.00Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA6_MAIZE5.727e-6391.20Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE5.727e-6391.20Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ARATH5.727e-6392.00Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA1_HORVU5.727e-6391.20Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA1_ARATH4.848e-6289.60Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA6_ARATH6.332e-6289.60Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ARATH6.332e-6289.60Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA_PRUDU3.142e-6188.00Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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