CF835787

Overview
NameCF835787
Unique NameCF835787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_ARATH (Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.639e-52
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = -3
Query:  511 KVTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLLYQ 861
            KVTVSFTPH MPMIRGMQSTIYVEMAPGV  EDL QQLK SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM+G+PE TGLL+Q
Sbjct:  281 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQ 397          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_ORYSJ (Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0617900 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.016e-43
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = -3
Query:  511 KVTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLLYQ 861
            KVT+SFTP+ + M RGMQST++VEMAPGVT  DL Q LK +YE EEFVKLL    VP T +V GSNYC MNVF DRIPGRAIIISVIDNLVKGASGQA+QNLN+MMG PENTGL YQ
Sbjct:  295 KVTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEGEEFVKLLNGSSVPHTRHVVGSNYCFMNVFEDRIPGRAIIISVIDNLVKGASGQAVQNLNLMMGLPENTGLQYQ 411          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_RHORT (N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=argC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.677e-28
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            V V+FTPH MPM RG+ STIY+    G     L Q L  +Y  E FV+++ +GV P T +VRGSN+ L+ V  DR+PGR I+  V DNLVKGASGQA+Q++N+M+GFPE  GL
Sbjct:  233 VAVTFTPHLMPMNRGILSTIYLRATAGNDATTLRQALSAAYADEAFVRVVPEGVSPHTRHVRGSNFVLIGVHADRVPGRVIVTCVEDNLVKGASGQAIQDMNVMLGFPETLGL 345          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_STAS1 (N-acetyl-gamma-glutamyl-phosphate reductase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=argC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.935e-27
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  517 KVTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLL 861
            +V V+FTPH +PM RG+ STIY+++    T EDL    K  YE + FV++   G  P+T  V GSNYC + ++ D     AI++SVIDNLVKGASGQA+QNLN+M G+ ENTGLL
Sbjct:  223 EVKVTFTPHLVPMTRGILSTIYIKLNHAFTNEDLHNLFKDYYEDKPFVRIRSLGQFPKTKEVYGSNYCDIGIYVDEENQTAILVSVIDNLVKGASGQAIQNLNLMYGWKENTGLL 337          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_OLICO (N-acetyl-gamma-glutamyl-phosphate reductase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=argC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.635e-26
Identity = 61/113 (53.98%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            V V+FTPH  PM RG+ STIYV    G T  DL + L   YE + FV +L  G  P + +VRGSN   + V  DR PGRAII+S +DNL KGASGQA+QN+N+M+GF E  GL
Sbjct:  233 VLVTFTPHLTPMNRGIYSTIYVRGRRGKTARDLHETLSKQYEKDPFVYVLPFGKTPNSRHVRGSNMTFIGVAEDRKPGRAIIVSTLDNLTKGASGQAVQNMNVMLGFAETLGL 345          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_GEOSM (N-acetyl-gamma-glutamyl-phosphate reductase OS=Geobacter sp. (strain M21) GN=argC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.442e-26
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            + ++FTPH +PM RG+ STIY + A  V   DL    +  Y+ E FV++L +GV+P T +VRGSN+C + +  D+  GR I+IS IDNLVKGASGQA+QN+N+M G PE  GL
Sbjct:  227 LNITFTPHLVPMDRGILSTIYSQTAGSVKAADLIALYEAFYDGEPFVRVLPEGVLPSTAHVRGSNFCDIGITVDQRTGRVIVISAIDNLVKGASGQAVQNMNLMCGLPETLGL 339          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_GEOUR (N-acetyl-gamma-glutamyl-phosphate reductase OS=Geobacter uraniireducens (strain Rf4) GN=argC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = -3
Query:  520 KVTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 861
            ++ +SFTPH +PM RG+ STIY      V+  +L +  +  Y+ E FV++L +G  P T +VRGSN+C + +  D   GR +++S IDNL+KGASGQA+QN+NIM GFPEN GL
Sbjct:  226 QLKISFTPHLVPMDRGILSTIYATPTGAVSSAELLELYRAYYQGEAFVRILPEGSFPSTSHVRGSNFCDIGLAVDNRTGRVVVVSAIDNLIKGASGQAVQNMNIMNGFPENLGL 339          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_DESRM (N-acetyl-gamma-glutamyl-phosphate reductase OS=Desulfotomaculum reducens (strain MI-1) GN=argC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            VTVSFTPH  PMIRG+ STIY  +   VT E+L    +  Y+ E FV++L  G+ P T  V GSN+C ++V  D    R I++S IDNL+KGA+GQA+QNLN+M+G PE+T L
Sbjct:  227 VTVSFTPHLTPMIRGILSTIYASLINNVTTEELTAIYRQFYQGERFVRVLPAGMYPTTKGVAGSNHCDISVTVDVRTKRVIVLSAIDNLIKGAAGQAVQNLNVMLGLPEDTAL 339          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_GEOSF (N-acetyl-gamma-glutamyl-phosphate reductase OS=Geobacter sp. (strain FRC-32) GN=argC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.668e-26
Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = -3
Query:  520 KVTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 861
            ++T++FTPH +PM RG+ STIY E A  V++  L +  +  Y  E FV++L +   P T  VRGSN+C + +  D+  GR +I+S IDNL+KGASGQA+QN+NIM GFPEN GL
Sbjct:  226 QLTITFTPHLVPMDRGILSTIYAEPAGEVSLAGLVELYRDFYHGEAFVRVLPENNFPSTAFVRGSNFCDIGLTVDKRTGRIVIVSAIDNLIKGASGQAIQNMNIMNGFPENLGL 339          
BLAST of CF835787 vs. ExPASy Swiss-Prot
Match: ARGC_GEOBB (N-acetyl-gamma-glutamyl-phosphate reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=argC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.308e-25
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = -3
Query:  520 VTVSFTPHXMPMIRGMQSTIYVEMAPGVTIEDLCQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGL 858
            + ++FTPH +PM RG+ STIY +    V   DL    +  Y+ E FV++L +GV+P T +VRGSN+C + +  D+  GR I+IS IDNLVKGASGQA+QN+N+M G PE  GL
Sbjct:  227 LNITFTPHLVPMDRGILSTIYSQPTGSVKAADLIALYQAFYDGEPFVRVLPEGVLPSTAHVRGSNFCDIGITVDQRTGRVIVISAIDNLVKGASGQAVQNMNLMCGLPETLGL 339          
The following BLAST results are available for this feature:
BLAST of CF835787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
ARGC_ARATH1.639e-5287.18Probable N-acetyl-gamma-glutamyl-phosphate reducta... [more]
ARGC_ORYSJ9.016e-4375.21Probable N-acetyl-gamma-glutamyl-phosphate reducta... [more]
ARGC_RHORT3.677e-2853.98N-acetyl-gamma-glutamyl-phosphate reductase OS=Rho... [more]
ARGC_STAS16.935e-2753.04N-acetyl-gamma-glutamyl-phosphate reductase OS=Sta... [more]
ARGC_OLICO2.635e-2653.98N-acetyl-gamma-glutamyl-phosphate reductase OS=Oli... [more]
ARGC_GEOSM3.442e-2651.33N-acetyl-gamma-glutamyl-phosphate reductase OS=Geo... [more]
ARGC_GEOUR4.495e-2649.12N-acetyl-gamma-glutamyl-phosphate reductase OS=Geo... [more]
ARGC_DESRM4.495e-2652.21N-acetyl-gamma-glutamyl-phosphate reductase OS=Des... [more]
ARGC_GEOSF7.668e-2650.88N-acetyl-gamma-glutamyl-phosphate reductase OS=Geo... [more]
ARGC_GEOBB1.308e-2550.44N-acetyl-gamma-glutamyl-phosphate reductase OS=Geo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835787 ID=CF835787; Name=CF835787; organism=Citrus sinensis; type=EST; length=863bp
CCCTTTGAGAAGTAATATATCGAATTTTACATAATTAAATGTCTGGTAAT
ACAATAAAATCATGCCAATCATCAAGAGGCAGCCATGTAATCCTAACAAT
TGGAAGACTAACTTGAATAAAAAGCACTTCTAATTGGTGTATTGAGGTGT
TACCACCACTTGCAAGCACAAAATGTTAAACCAATTTCTCAAAATTCCCT
CAACACTGATAAGTGAATATTCATTATTACACAAATGGACTCCTGTTATA
CTATTCTACATGCTTCTAGCACCACTCTTCTCTGACAATTCGACGAAATG
GAGGAACTCTTCAAAAGGGTGTCGGAGCTTTGAAAACAAAATTCCCCCAA
AGTAACCTGAACTGTTCCTGAACAGCCTCCATAGTCGATAGACGAAATAT
ACTAATTTTCAAGAGAGTTTTGGGTAGGCTAAGAGAGATTTGTTAATTAG
TGTTGAAAATGCCTGCTTACTCTTTAAACATATTAAGAAAAGAAACTAAG
GAAACAAGGGCTGATATAGAAGCCCAGTATTTTCCGGAAATCCCATCATT
ATGTTAAGATTTTGAAGAGCTTGACCTGATGCTCCCTTCACAAGATTATC
AATAACTGATATAATTATTGCTCTTCCAGGAATTCGATCAGGAAAGACAT
TCATCAAACAGTAATTAGAACCTCGAACATTGTGAGTCCGAGGGACAACT
CCCTTTTCCAACAACTTCACAAATTCCTCATGCTCATAGGAGATTTTTAA
TTGCTGGCATAAATCCTCGATTGTCACTCCTGGAGCCATTTCAACGTATA
TAGTTGATTGCATGCCTCGGATCATTGGCATTANGTGTGGAGTGAAACTG
ACTGTTACTTTTG
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