CF835793

Overview
NameCF835793
Unique NameCF835793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835793_ssr681 microsatellite CF835793_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:381..1129. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.804e-85
Identity = 155/178 (87.08%), Postives = 166/178 (93.26%), Query Frame = -3 
Query:  217 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPISKA-VITE 747
            IM VQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGID  FTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K +S   VITE
Sbjct:  102 IMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITE 279
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 5.804e-85
Identity = 155/178 (87.08%), Postives = 166/178 (93.26%), Query Frame = -3 
Query:  217 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPISKA-VITE 747
            IM VQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGID  FTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K +S   VITE
Sbjct:  102 IMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITE 279
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.762e-84
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = -3 
Query:  235 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPIS 747
            IM VQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGID  FTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L  K +S
Sbjct:  103 IMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.914e-84
Identity = 152/178 (85.39%), Postives = 165/178 (92.70%), Query Frame = -3 
Query:  223 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKP---ISKAVI 747
            IM VQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGID  FTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF KSPYQE+TD L   P   IS+ V+
Sbjct:   94 IMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVVV 271
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.483e-72
Identity = 130/165 (78.79%), Postives = 143/165 (86.67%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KAT+  +  TY +LTPD WRET F KSPYQEYTD L
Sbjct:   95 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.937e-72
Identity = 129/165 (78.18%), Postives = 145/165 (87.88%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:   94 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 128/165 (77.58%), Postives = 145/165 (87.88%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  109 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 128/165 (77.58%), Postives = 145/165 (87.88%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  109 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 128/165 (77.58%), Postives = 145/165 (87.88%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  109 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CF835793 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 128/165 (77.58%), Postives = 145/165 (87.88%), Query Frame = -3 
Query:  253 IMRVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDHPFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 747
            IM VQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGID  +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  109 IMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
The following BLAST results are available for this feature:
BLAST of CF835793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
RS22_ARATH5.804e-8587.0840S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH5.804e-8587.0840S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS23_ARATH3.762e-8488.3040S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS24_ARATH4.914e-8485.3940S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS2_URECA1.483e-7278.7940S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_ICTPU1.937e-7278.1840S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT2.529e-7277.5840S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE2.529e-7277.5840S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN2.529e-7277.5840S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN2.529e-7277.5840S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835793 ID=CF835793; Name=CF835793; organism=Citrus sinensis; type=EST; length=749bp
TTTTTTTTTTTTTTTTTCATTCAAGAAAACTCTGATTGCAAAACTTTAAA
GCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCCTGCAGAAATGAA
AAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAAAGTCAACCAAAA
TGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTTAAGTAGCTTAAG
GGTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTGATGGGCTTTGGC
GTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCACAAAACGAGTCTC
CCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCAACAAACACTCAA
AGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGACCCACGAGAAGAT
GTGAAGGGATGGTCAATACCAGCAAACTGCAGCACCTTCTTTGGAACCCT
AGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCATCCTCACGGTGA
CACTGCCACACTTACCGGTCACCTTACACGGCACGGTGTGTGGCCTCCCG
ATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCACCGACAGCTTCGC
CAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTTTGGAGCACTTAA
CGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACGACGAAGGCCTTG
AACCTCGTCCTCTGACCGGCACGTGTCTGTTTCTGCACCCGCATGATCT
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