CF835831

Overview
NameCF835831
Unique NameCF835831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835831_ssr145 microsatellite CF835831_ssr145:145..156. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835831_ssr542 microsatellite CF835831_ssr542:542..559. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF835831 vs. ExPASy Swiss-Prot
Match: COMA2_BACSU (Putative esterase comA2 OS=Bacillus subtilis GN=yuxO PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:  199 LKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAH--MASGFKRVAGIQLTINHLKSAELGDLVRAVAAPINLGKTIQVWQVRLWKVKE 507
            L+A+G E+ E T ER +    V   + QPF  LHGG S  +AE+ AS GA   +    +   G+++  NHLKS + G  V+A+A P+++G+T  V+ + ++  +E
Sbjct:    8 LEALGIEIVENTAERCVAVMPVDHRTVQPFGYLHGGASVALAETAASAGAQNLIDHTTQACVGLEINANHLKSVKEG-TVKAIAEPVHIGRTTIVYHIHIYDEQE 111
The following BLAST results are available for this feature:
BLAST of CF835831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COMA2_BACSU7.202e-1236.19Putative esterase comA2 OS=Bacillus subtilis GN=yu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01P11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835831 ID=CF835831; Name=CF835831; organism=Citrus sinensis; type=EST; length=792bp
ACGTTGACCTTTCTCTCTGATAAGAGCAAATGAGCAATAAGACTCTTTGT
ACTAATTAAACAAAAACACGTTGCTCGTTTGGGTTGTTGTACCTACTACC
CACCAGCAGCAGCGCTGAGCGTTCAACACTGTAGCATGGAGCATTCATCA
TCATCAAATTCAAAGCAGAGAAAGAGAATTGCAGTTCCGGATGCTCCGTT
GAAGGCAATTGGGTTTGAACTTGAGGAATTAACCCCTGAAAGAATCATCG
GCTGCTTCCGGGTTACCCAAAACTCGTGTCAGCCATTTAAGGTGTTGCAT
GGGGGAGTATCGGCGTTGATAGCAGAGTCATTGGCGAGCATGGGGGCGCA
CATGGCATCTGGTTTCAAAAGAGTGGCTGGGATTCAGCTGACCATCAATC
ACTTGAAGAGCGCTGAGCTTGGCGACCTTGTCCGTGCTGTTGCCGCCCCC
ATCAATCTTGGAAAGACCATTCAGGTTTGGCAAGTTCGTCTTTGGAAAGT
AAAAGAAGTACAATCTGATGATGGTCGCGATCATGATGCTGATCATCATC
ATCATCATCATAATAATTCTACTTCTTCTTCTATTATGATTTCTTCCTCC
ACCGTTACTCTCCTATGCAACCTCCCTGTCCCTGATCATGCTAAACATGC
AGGAGATGCTCTNCAGAACTCTGCCAGCAAATTGTGATATACATACATAT
ATATCATATATGGATAATTTCTCTTTTTTTATTTTCCTTTTTTCTTCATT
TTTCAAATTTCACTGTACGTTGTAGTCAACGCAATGCAATGC
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