CF835852

Overview
NameCF835852
Unique NameCF835852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10176 contig Csv1_Contig10176:313..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835852 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:    2 IVTLSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGDHE 319
            +V +STDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  + D  +  L + D+E
Sbjct:   97 VVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201
[Close]
BLAST of CF835852 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 2 
Query:    2 IVTLSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGD 313
            +V +STD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      RR L + D
Sbjct:  104 VVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207
The following BLAST results are available for this feature:
BLAST of CF835852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.886e-1439.0921 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU5.487e-1436.36Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02A04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835852 ID=CF835852; Name=CF835852; organism=Citrus sinensis; type=EST; length=576bp
AATTGTCACCCTTTCAACTGATGTCAACCTGAGATTCCCCGTAAAAGTTT
CTGTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTATGAC
GATCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCAGGAGCTGAAAC
GTTGCTAAATTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCATATGGTG
GTGTATACAATATTGTCCATTGTCCGAGTGTCTGTCTATCTTGTCCTAGA
CGCTGCAACAAAATTGGCGTTTCAACTAAGGATGGCGTTCGACGTCTGCT
TCTAGTTGGTGATCATGAACCGGCTTTGAATGTTCTGTTTTTTCCATCAG
AGGAAAGCTCAAGGCTACTTCAAGCTGCTAACGCAATATCAAGGTTTTTT
GAAGCTGCTGAAGCAATATCAATGACCGCGTAATGAATGAACTTAGCTGT
ATCATTCTAAATAATAGACCAGGCTAGTAACCTTTTATCTCTATTACAGA
ATAAAAATAACACCGCCTGTGATCCTTTTGCTGTTGTTAATCTCTACTCA
TGTTATGTATAAAAAAAAAAAAAAAA
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