CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9412 contig Csv1_Contig9412:14..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.359e-75
Identity = 135/198 (68.18%), Postives = 170/198 (85.86%), Query Frame = 2
Query:  125 EQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDS 718
            ++RWSL+GMTALVTGGTRGIG+AIVEEL  FGA V+TCSR++ +L+E +++W+ KG KVSG  CD+   ++RQ LME+V S F+GKLNIL+NNAGTTIPKEAT FT ED+S IM TNFE++Y+L QLA+PLLKASGN +I+F SS  GVIAVPL SIYA++KGA+NQ+TK+LACEW KD+IRVNAVAPWII T +I++
Sbjct:   10 DRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIEA 207          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.132e-72
Identity = 132/206 (64.08%), Postives = 165/206 (80.10%), Query Frame = 2
Query:  110 MSESREQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            M+ + E RWSLKG TALVTGG++GIG+AIVEEL   GA V+TCSRNE EL+E ++ W+ KGL V GS CDL  R ER KLM+TV   FDGKLNILVNNAG  I KEA +FT +D++ IM TNFE+AYHLSQ+AYPLLKAS NGN+IF+SS+ G  A+P  S+Y+++KGA+NQ+TK+LACEW KDNIRVN+VAP +I T L+++  K
Sbjct:    9 MNCNNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIK 214          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.101e-68
Identity = 122/200 (61.00%), Postives = 155/200 (77.50%), Query Frame = 2
Query:  122 REQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            + QRWSLK  T LVTGGT+GIGHAIVEE   FGA++HTC+RNE ELNE + +W+ KG +V+GS CD  +R ER+KLM+TV S F GKL+IL+NN G    K   ++T EDFS  ++TN ESAYHLSQLA+PLLKASG GNIIF+SS+ GV++  + SIY++TKGA+NQL +NLACEW  D IR NAVAP +I T L +++
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV 205          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.043e-67
Identity = 123/195 (63.08%), Postives = 156/195 (80.00%), Query Frame = 2
Query:  131 RWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID 715
            RW+L+G TALVTGG+RGIG+ IVEEL + GA V+TCSRN+ ELN+ + +W+SKG KV  S CDL  R+ERQ+LM TV + F GKLNILVNNAG  I KEA ++T+ED+S IM+ NFE+AYHLS LA+P LKAS  GN++FISSV+G +AVP  ++Y +TKGAM+QLT+ LA EW KDNIRVN V P +I TSL++
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVE 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.326e-65
Identity = 118/195 (60.51%), Postives = 153/195 (78.46%), Query Frame = 2
Query:  131 RWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID 715
            RW+L+G TALVTGG+RGIG+ IVEEL   GA V+TCSRN+ EL+E + +W+SKG  V  S CDL  R+ER++ M+TV + F GKLNILVNNAG  I KEA ++TMED+S IM+ NFE+AYHLS LA+P LKAS  GN++FISS++G  A+P  ++Y +TKGAM+QLT+ LA EW KDNIRVN V P +I TS+++
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVE 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 65/203 (32.02%), Postives = 110/203 (54.19%), Query Frame = 2
Query:  119 SREQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCS-EFD-GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            S    +SL G  ALVTG +RGIG  + + L  +GA V    RN   L+     ++++GLK S +  D+    ++  +++ V + E D G ++IL+NNAG        EF+ +D+  +M+TN  + + + Q     +   G G I+ I SV   +A P  + Y +TKGA+  LTK +A +WG+  +++N +AP    T + + +
Sbjct:    2 SHPDLFSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDV---TDQDAVIDGVAAIERDMGPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERL 201          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 55/195 (28.21%), Postives = 110/195 (56.41%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIE 724
            +K   A+VTG + GIG AI ++L+  GA +    RNE  LNE  Q+  +    VS    D+ +++    +++ V   F G ++I+VN+AG ++  + T++ +E + T++  N +   H+ Q   P L    +G+II ++SV+G       ++Y +TK A++ +T++L  E  +  ++V +++P ++ T + +  +
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTD 194          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 55/195 (28.21%), Postives = 110/195 (56.41%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIE 724
            +K   A+VTG + GIG AI ++L+  GA +    RNE  LNE  Q+  +    VS    D+ +++    +++ V   F G ++I+VN+AG ++  + T++ +E + T++  N +   H+ Q   P L    +G+II ++SV+G       ++Y +TK A++ +T++L  E  +  ++V +++P ++ T + +  +
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTD 194          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            L G  A++TG   GIG  I       GA V     N    N  + E +  G +     CD+    E   L +   S+  GK++ILVNNAG   PK   +  M DF      N  S +HLSQL  P ++ +G G I+ I+S+         + YAS+K A + L +N+A + G+ NIRVN +AP  I T  + S+
Sbjct:    9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV 200          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            L G  A++TG   GIG  I       GA V     N    N  + E +  G +     CD+    E   L +   S+  GK++ILVNNAG   PK   +  M DF      N  S +HLSQL  P ++ +G G I+ I+S+         + YAS+K A + L +N+A + G+ NIRVN +AP  I T  + S+
Sbjct:    9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV 200          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
TRNH_DATST1.359e-7568.18Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST3.132e-7264.08Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH1_ARATH2.101e-6861.00Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN2_DATST1.043e-6763.08Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI6.326e-6560.51Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
GNO_GLUOX4.586e-2332.02Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
Y2049_STAEQ8.650e-2228.21Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES8.650e-2228.21Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
HDHA_ECOLI2.130e-2034.547-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO572.130e-2034.547-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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