CF835925

Overview
NameCF835925
Unique NameCF835925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1141 contig Csv1_Contig1141:1..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA22_ARATH (Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.418e-40
Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = -2
Query:  162 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFFR 494
            +ELE+LANYLAELTL+EYSFLRF PSL+AASAVFLA+WTL+Q++HPWN TL+HYT Y+ +ELK TVLA+EDLQLNT GC+L A REKY Q KFK VA +T  +RV S+F R
Sbjct:  326 IELEYLANYLAELTLVEYSFLRFLPSLIAASAVFLARWTLDQTDHPWNPTLQHYTRYEVAELKNTVLAMEDLQLNTSGCTLAATREKYNQPKFKSVAKLTSPKRVTSLFSR 436          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA24_ARATH (Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.674e-39
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  186 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTE 494
            LE+EFLANYL ELTL++Y FL+F PS++AASAVFLAKWTLNQS HPWN TLEHYT+YKAS+LK +V AL+DLQLNT GCSLN+IR KYRQ+KFK VA  +  E
Sbjct:  351 LEMEFLANYLTELTLMDYPFLKFLPSIIAASAVFLAKWTLNQSSHPWNPTLEHYTTYKASDLKASVHALQDLQLNTKGCSLNSIRMKYRQDKFKSVAVFSSGE 453          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA23_ARATH (Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.124e-37
Identity = 74/109 (67.89%), Postives = 93/109 (85.32%), Query Frame = -2
Query:  168 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVF 494
            LE+EFLA+YL ELTL++Y FL+F PS+VAASAVFLAKWT++QS HPWN TLEHYT+YKAS+LK +V AL+DLQLNT GC L+AIR KYRQEK+K VA +T  + + ++F
Sbjct:  342 LEVEFLASYLTELTLIDYHFLKFLPSVVAASAVFLAKWTMDQSNHPWNPTLEHYTTYKASDLKASVHALQDLQLNTKGCPLSAIRMKYRQEKYKSVAVLTSPKLLDTLF 450          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA21_ARATH (Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.917e-37
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  162 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFFR 494
            +E+E+LANY AELTL EY+FLRF PSL+AASAVFLA+WTL+QS HPWN TL+HYT Y+ S LK TVLA+E+LQLNT G +L AI  KY Q+KFK VAT+T  ERV ++F R
Sbjct:  334 IEMEYLANYFAELTLTEYTFLRFLPSLIAASAVFLARWTLDQSNHPWNQTLQHYTRYETSALKNTVLAMEELQLNTSGSTLIAIHTKYNQQKFKRVATLTSPERVNTLFSR 444          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA21_ORYSJ (Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 72/109 (66.06%), Postives = 90/109 (82.57%), Query Frame = -2
Query:  168 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVF 494
            + L +LANYLAELTL++YSFL+F PS+VAASAVFLA+WTL+QS+ PWN TLEHYTSYK+S+++  V AL +LQ NT  C LNAIREKYRQ+KF+CVA +T  E   S+F
Sbjct:  381 ITLGYLANYLAELTLIDYSFLKFLPSVVAASAVFLARWTLDQSDIPWNHTLEHYTSYKSSDIQICVCALRELQHNTSNCPLNAIREKYRQQKFECVANLTSPELGQSLF 489          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA13_ORYSJ (Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.923e-27
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  162 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFFR 494
            L LEFLANY+AEL+LLEY+ L + PSLVAASA+FLAK+ L  ++HPWNSTL HYT YK+SEL   V AL  L     G +L AIREKY Q K+K VA       + + FFR
Sbjct:  377 LHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQYKSSELSDCVKALHRLFCVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFR 487          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA11_ORYSJ (Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.165e-26
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  162 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFFR 494
            L LEFLANY+AEL+LLEY+ L + PSLVAASA+FLAK+ L  ++HPWNSTL HYT YK+SEL   V AL  L     G +L AIREKY Q K+K VA       + + FFR
Sbjct:  394 LHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFR 504          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA31_ARATH (Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  168 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATM-TPTERVLSVF 494
            L++EFL +YL+EL++L+Y  ++F PS VAASAVFLA++ +   +HPWN  LE YT YKA +LK  V  + DL L+    +L AIREKY+Q KFKCVATM    E  L+VF
Sbjct:  241 LQMEFLCSYLSELSMLDYQSVKFLPSTVAASAVFLARFIIRPKQHPWNVMLEEYTRYKAGDLKECVAMIHDLYLSRKCGALEAIREKYKQHKFKCVATMPVSPELPLTVF 350          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCA12_ORYSJ (Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 66/111 (59.46%), Postives = 76/111 (68.47%), Query Frame = -2
Query:  162 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFFR 494
            L LEFLANY+AEL+LLEY+ L + PSLVAASA+FLAK+ L  ++HPWNSTL HYT YK+SEL   V AL  L     G +L AIREKY Q K K VA       V S FFR
Sbjct:  364 LHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHK-KFVAKKHCPPSVPSEFFR 473          
BLAST of CF835925 vs. ExPASy Swiss-Prot
Match: CCNAL_DAUCA (G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.749e-25
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  165 LELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFF 494
            L+ EFLANYLAEL+LL+Y  L F PSL+AAS  FLA++T+  + +PW+  L+  + YK+ +LK  VL L DLQ+   G SL+A+R+KY++ KFKCV+T++P   +    F
Sbjct:  229 LKFEFLANYLAELSLLDYGCLEFVPSLIAASVTFLARFTIRPNVNPWSIALQKCSGYKSKDLKECVLLLHDLQMGRRGGSLSAVRDKYKKHKFKCVSTLSPAPEIPESIF 338          
The following BLAST results are available for this feature:
BLAST of CF835925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CCA22_ARATH1.418e-4071.17Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=... [more]
CCA24_ARATH2.674e-3973.79Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=... [more]
CCA23_ARATH1.124e-3767.89Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=... [more]
CCA21_ARATH1.917e-3767.57Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=... [more]
CCA21_ORYSJ3.614e-3666.06Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA13_ORYSJ8.923e-2757.66Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA11_ORYSJ1.165e-2657.66Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA31_ARATH1.683e-2553.64Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CY... [more]
CCA12_ORYSJ2.871e-2559.46Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCNAL_DAUCA3.749e-2549.09G2/mitotic-specific cyclin C13-1 (Fragment) OS=Dau... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835925 ID=CF835925; Name=CF835925; organism=Citrus sinensis; type=EST; length=495bp
ACGATGAACAGACAATAAAGGCAAACCATAAATTAAAATTAAACGGTAAA
ATGTGTTATGATGGGAACCCAGATCACCCTCCAAGAACTAAAATGGAAGC
GCTGTGTCAACAGGTTGTGTAACTCATCTTATGAGGAAGAATCAGCTATT
GTACTTGTTCATCTAAAGAAAACTGATAGAACTCGCTCTGTTGGGGTCAT
GGTTGCCACACATTTGAACTTTTCCTGTCTATATTTCTCACGTATGGCAT
TTAGTGAGCAACCGTCAGTATTGAGCTGCAAATCTTCTAGTGCTAGTACT
GTACACTTCAGCTCTGATGCCTTGTAACTAGTATAATGCTCTAAAGTTGA
ATTCCATGGGTGCTCTGACTGATTAAGCGTCCATTTGGCAAGGAACACGG
CAGATGCTGCTACAAGGGAAGGCCGAAACCTTAGGAAGCTATACTCCAAA
AGAGTCAACTCAGCCAAGTAATTTGCTAGGAATTCAAGCTCCAAA
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