CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:543..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.679e-84
Identity = 157/218 (72.02%), Postives = 177/218 (81.19%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            SAC  ADVLEALGVV+DL PEG++RCV+E GIGFMMS  YHPAMK V PVRKKLK+KTVFNILGPMLNPA V +AVVGVY+++LV+KMA ALQRFG+KRALVVHS GLDEMSPLG GL+ DVT EKIE FSFDPLD+GIPRCTLE L+GGGP YNA+VLRRVLSGE G               VS +V TLAEGV +ARE+Q SGKA+ TLD WI +S
Sbjct:  220 SACGSADVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPVRKKLKIKTVFNILGPMLNPARVSYAVVGVYHKDLVVKMAKALQRFGMKRALVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDYNADVLRRVLSGESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINIS 437          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CHLSY (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.549e-42
Identity = 101/222 (45.50%), Postives = 132/222 (59.46%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIER-FSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 659
            S C  ADVLE LGV I+LD EGV RC+ EAGIGFM + K+HPAM+F  PVR+++ ++TVFNILGP+ NPA   + V+GV +  L  K+A AL R     ALVVH + G+DE++  GP LI DV   +  R     P D G+PR   ++L+GG  AYN  ++R +LSG E G                      LA GVA+AR    SG+AL  L+  I VS+
Sbjct:  116 SVCGSADVLEGLGVQIELDAEGVARCLREAGIGFMFAPKFHPAMRFAGPVRREIGIRTVFNILGPLTNPARARYQVLGVASAALAEKLAYALSRLDTVHALVVHGDGGVDELTLSGPNLIFDVRAGQAPRQMLVAPEDVGLPRAPQDALRGGDVAYNVAIVRAILSGEEHGPRRDVVLFNAAAAMVAGDLAPDLATGVAMARHSIDSGRALERLNQMIAVSR 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CHLAA (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.549e-42
Identity = 101/222 (45.50%), Postives = 132/222 (59.46%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDVTQEKIER-FSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 659
            S C  ADVLE LGV I+LD EGV RC+ EAGIGFM + K+HPAM+F  PVR+++ ++TVFNILGP+ NPA   + V+GV +  L  K+A AL R     ALVVH + G+DE++  GP LI DV   +  R     P D G+PR   ++L+GG  AYN  ++R +LSG E G                      LA GVA+AR    SG+AL  L+  I VS+
Sbjct:  116 SVCGSADVLEGLGVQIELDAEGVARCLREAGIGFMFAPKFHPAMRFAGPVRREIGIRTVFNILGPLTNPARARYQVLGVASAALAEKLAYALSRLDTVHALVVHGDGGVDELTLSGPNLIFDVRAGQAPRQMLVAPEDVGLPRAPQDALRGGDVAYNVAIVRAILSGEEHGPRRDVVLFNAAAAMVAGDLAPDLATGVAMARHSIDSGRALERLNQMIAVSR 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_RUBXD (Anthranilate phosphoribosyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=trpD PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 97/218 (44.50%), Postives = 131/218 (60.09%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            ADVLEALG  I+L PE V RC++EAGIGFM +  +HPAM+ V PVR +L  +TVFN+LGP+ NPA     +VGV++   V  MA AL+  G +RALVVH  +G+DE++  GP L+ +V    +E +   P D+G+ R   + L GG    NA +LR VLSG ERG               V+ K  ++ EGV LA     SG AL  L+ ++ VS+ L
Sbjct:  120 ADVLEALGAAIELSPEQVSRCIEEAGIGFMFARTHHPAMRHVAPVRAELPFRTVFNLLGPLTNPAGARRQLVGVFSAGYVRPMAEALEGLGAERALVVHGRDGMDEITVTGPTLVAEVGGGGVEEYEISPEDFGLSRHAPDGLLGGDAHLNARILRDVLSGEERGASRDVIVLNAGAAIYVAGKAPSIEEGVRLAEGSLESGAALAALERFVRVSRRL 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_DEHSC (Anthranilate phosphoribosyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=trpD PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 93/224 (41.52%), Postives = 143/224 (63.84%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERF--SFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            S C  ADVLEALG+ IDL+ E V+ C+++ GIGFM +  +HPAMKFV P R+++ ++TVFNILGP+ NPA   + ++GV    L  K+ +AL    +K ALVVH  +G+DEMS  G  +I ++  ++I +F  +  P + G+ + +L++++GG    NA  LR +LSG +G               V+ K++T+AEG++LA EI  +G ALN L+  I++S+ L
Sbjct:  115 SMCGSADVLEALGIKIDLNAEQVKICIEQIGIGFMFAPVFHPAMKFVAPSRREIGIRTVFNILGPLTNPASAQYQLIGVPEIGLGDKIISALCHMDIKHALVVHGLDGMDEMSISGDSVIWELKDKEIIKFRHTVSPREMGLEQVSLQAVKGGAAEENALTLRAILSGAKGPKRDVVLLNAAAALMVADKIDTIAEGISLAAEIIDNGLALNKLESLIKLSQSL 338          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_DEHE1 (Anthranilate phosphoribosyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=trpD PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.729e-41
Identity = 93/224 (41.52%), Postives = 143/224 (63.84%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERF--SFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            S C  ADVLEALG+ IDL+ E V+ C+++ GIGFM +  +HPAMKFV P R+++ ++TVFNILGP+ NPA   + ++GV    L  K+ +AL    +K ALVVH  +G+DEMS  G  +I ++  ++I +F  +  P + G+ + +L++++GG    NA  LR +LSG +G               V+ K++T+AEG++LA EI  +G ALN L+  I++S+ L
Sbjct:  115 SMCGSADVLEALGIKIDLNAEQVKICIEQIGIGFMFAPVFHPAMKFVAPSRREIGIRTVFNILGPLTNPASAQYQLIGVPEIGLGDKIISALCHMDIKHALVVHGLDGMDEMSISGDSVIWELKDKEIIKFRHTVSPREMGLEQVSLQAVKGGAAEENALTLRAILSGAKGPKRDVVLLNAAAALMVADKIDTIAEGISLAAEIIDNGLALNKLESLIKLSQSL 338          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CHLAD (Anthranilate phosphoribosyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 99/222 (44.59%), Postives = 131/222 (59.01%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE-GLDEMSPLGPGLILDV-TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 659
            S C  ADVLE LGV I+LD EGV RC+ +AGIGFM + K+HPAM+F  PVR+++ ++TVFNILGP+ NPA   + V+GV +  L  K+ANAL R     ALVVH + G+DE++  GP LI +V     + +    P D G+ R   E+L+GG  AYN  ++R +LSGE RG                      LA GV +AR    SG+AL  L   I VS+
Sbjct:  116 SVCGSADVLEGLGVQIELDAEGVARCLRDAGIGFMFAPKFHPAMRFAGPVRREIGIRTVFNILGPLTNPARARYQVLGVASAALAEKLANALSRLDTVHALVVHGDGGVDELTLSGPNLIFEVRAGHALRQMIVAPEDVGLERAPREALRGGDVAYNVALVRAILSGEDRGPRRDVVLLNAAAALVAGDVAPDLATGVKMARASIDSGRALERLHRMIAVSR 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CHLFF (Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 81/217 (37.33%), Postives = 126/217 (58.06%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF-GLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            ADVLEALG+ I++ PE +  C+ E GIGFM +  YHP++K + P+RK +K+ + FNILGP+LNPA   ++++GV NE ++  M+    +F   +R  + H  GLDE++ LG  +  D+ Q K  R   DP  +G   C +E L+GG    NA +L++  SG++G               +     TL EG+ +AR+  + G+AL  L+ W+  S+ L
Sbjct:  119 ADVLEALGIEIEMTPEELLSCIQEVGIGFMFAPIYHPSLKKLAPIRKGMKIPSTFNILGPLLNPANTEYSLIGVSNEPILELMSEVCLQFQNTQRTFLFHGSGLDELTTLGKVVGYDIQQGKKTRIEIDPTSFGFASCKIEELKGGDSKMNAFILKKAFSGQQGAIADALIFNAGAAVWIFGNATTLEEGIQIARQTLMEGEALRVLEKWVAFSQQL 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_RHILO (Anthranilate phosphoribosyltransferase OS=Rhizobium loti GN=trpD PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40
Identity = 86/213 (40.38%), Postives = 125/213 (58.69%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV ID+ P+ + RC+ EAG+GFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV+    +L +A  L+  G + A VVH +G DE++  G   + ++   +I  F+  P + G+ R T + L+GG  AYNA  LR +L G  G               ++ K  TL +G+ALA +   SG+AL  LD  +E+S
Sbjct:  122 ADVLIALGVKIDIPPDAIGRCIHEAGVGFMFAPAHHPAMKHVGPTRVELGTRTIFNLLGPLSNPAGVVRQMVGVFLPEWILPVAETLKALGTEHAWVVHGDGYDEITTTGETQVAELIGGEIRSFTLTPEEVGLKRHTKDELRGGDAAYNANALRDMLDGAAGAYRDTVLMNAGAGLVIAGKATTLGDGIALAAQAIDSGRALQVLDRLVEIS 334          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSF (Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain FRC-32) GN=trpD PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 87/213 (40.85%), Postives = 127/213 (59.62%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLD 638
            SAC  ADV+EALG+ +++ PE V  C++EAGIGF+ +   H AMKF    RK++ ++T+FNILGP+ NPA  P  V+GVY E LV K+A+ L+  G +R  VV+  +G+DE++      + +VT E+++ + F P D G  RCT++ L+GG    NA  +R +L GE+G                + +    AEGV LA E   SG AL  L+
Sbjct:  130 SACGSADVVEALGISLEVTPETVENCINEAGIGFLYAPALHGAMKFAIGPRKEIGIRTIFNILGPLTNPAGAPCQVLGVYREELVEKLAHVLKNLGCRRGFVVYGMDGMDEITLTTETRMAEVTPEEVKAWLFKPEDLGFARCTMDDLRGGDAVANAVTVRGILEGEKGPKRDVVLINAAFGLVAAGRAANPAEGVKLAVEALDSGAALAKLE 342          
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ARATH3.679e-8472.02Anthranilate phosphoribosyltransferase, chloroplas... [more]
TRPD_CHLSY4.549e-4245.50Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_CHLAA4.549e-4245.50Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_RUBXD7.760e-4244.50Anthranilate phosphoribosyltransferase OS=Rubrobac... [more]
TRPD_DEHSC1.729e-4141.52Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_DEHE11.729e-4141.52Anthranilate phosphoribosyltransferase OS=Dehaloco... [more]
TRPD_CHLAD5.030e-4144.59Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_CHLFF3.260e-4037.33Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]
TRPD_RHILO7.263e-4040.38Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_GEOSF3.605e-3940.85Anthranilate phosphoribosyltransferase OS=Geobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
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