CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9665 contig Csv1_Contig9665:697..1386. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.563e-77
Identity = 132/151 (87.42%), Postives = 144/151 (95.36%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM N+RPL PGDSEIDELFKIFR+LGTPNEDTWPGVTSLPDFKS FP+WPSK+L TVV NLEPAG+DLL  MLC+DP++RITARSA+EHEYF+D++FVP
Sbjct:  141 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP 291          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.118e-76
Identity = 134/151 (88.74%), Postives = 144/151 (95.36%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR LGTPNE+TWPGVTSLPDFKS+FPKW SK+L  VV NL+PAGIDLL KMLC+DPS+RITAR+ALEHEYF+D+ FVP
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRTLGTPNEETWPGVTSLPDFKSSFPKWISKDLSAVVPNLDPAGIDLLNKMLCLDPSKRITARNALEHEYFKDIGFVP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.615e-75
Identity = 132/151 (87.42%), Postives = 144/151 (95.36%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRV+GTPNE+TWPGVTSLPDFKSAFPKWP+KEL  VV NL+ +G+DLL KML +DPS+RITAR+AL+HEYF+D+ FVP
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVMGTPNEETWPGVTSLPDFKSAFPKWPAKELAAVVPNLDASGLDLLDKMLRLDPSKRITARNALQHEYFKDIGFVP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.699e-75
Identity = 129/151 (85.43%), Postives = 143/151 (94.70%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L TVV NL+ AG++LL  MLC+DPS+RITAR A+EHEYF+D++FVP
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATVVPNLDAAGLNLLSSMLCLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.137e-75
Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM+NQRPLFPGDSEIDELFKIFR+ GTPNE+TWPGVTSLPDFKSAFPKWP+K+L T V NLEPAG+DLL     +DP+RRITAR ALEHEYF+D++FVP
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRITGTPNEETWPGVTSLPDFKSAFPKWPAKDLATQVPNLEPAGLDLLSSTCRLDPTRRITARGALEHEYFKDIKFVP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.578e-73
Identity = 126/151 (83.44%), Postives = 142/151 (94.04%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGC+FAEMVN+RPLFPGDSEIDELFKIFR+LGTPNE+TWPGVT+LPDFKS FPKWP K+L T+V NL+ AG++LL  ML +DPS+RITAR A+EHEYF+D++FVP
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEETWPGVTALPDFKSTFPKWPPKDLATMVPNLDAAGLNLLSSMLSLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2B_ANTMA (Cell division control protein 2 homolog B (Fragment) OS=Antirrhinum majus GN=CDC2B PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.848e-71
Identity = 124/147 (84.35%), Postives = 136/147 (92.52%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPE+LLGSRHYSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDEL KIFR++GTPNED WPGVTSLPDFKS+FPKWP KEL T+V NL   G+DLL KML +DPS+RITA+ ALEHEYF+D+
Sbjct:  131 LADFGLARAFGIPVRTFTHEVVTLWYRAPEVLLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELHKIFRIIGTPNEDIWPGVTSLPDFKSSFPKWPPKELATIVPNLGATGLDLLCKMLQLDPSKRITAKKALEHEYFKDI 277          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.485e-70
Identity = 123/150 (82.00%), Postives = 139/150 (92.67%), Query Frame = -2
Query:  240 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFV 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSR YSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIFRVLGTPNE +WPGV+SLPD+KSAFPKW +++L T+V  L+PAG+DLL KML  +P++RITAR ALEHEYF+D+E V
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDLEMV 293          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.485e-70
Identity = 123/150 (82.00%), Postives = 139/150 (92.67%), Query Frame = -2
Query:  240 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFV 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+R YSTPVDVWSVGCIFAEMVNQ+PLFPGDSEIDELFKIFR+LGTPNE +WPGV+ LPDFK+AFP+W +++L TVV NL+PAG+DLL KML  +PS+RITAR ALEHEYF+D+E V
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEQSWPGVSCLPDFKTAFPRWQAQDLATVVPNLDPAGLDLLSKMLRYEPSKRITARQALEHEYFKDLEVV 293          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.572e-69
Identity = 120/148 (81.08%), Postives = 136/148 (91.89%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+RHYSTPVD+WSVGCIFAEMVNQ+PLFPGDSEIDELFKIF ++GTPNE+TWPGV SLPD+ S FPKWPS +L TVV  L+ +G+DLL KML +DPS+RI AR+ALEHEYF+D+E
Sbjct:  143 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFSIMGTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDLE 290          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC21_MEDSA8.563e-7787.42Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_CHERU1.118e-7688.74Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA1.615e-7587.42Cell division control protein 2 homolog A OS=Antir... [more]
CDC2_VIGAC4.699e-7585.43Cell division control protein 2 homolog OS=Vigna a... [more]
CDC22_MEDSA6.137e-7586.09Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGUN2.578e-7383.44Cell division control protein 2 homolog OS=Vigna u... [more]
CDC2B_ANTMA1.848e-7184.35Cell division control protein 2 homolog B (Fragmen... [more]
CDKA1_ORYSJ3.485e-7082.00Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_MAIZE3.485e-7082.00Cell division control protein 2 homolog OS=Zea may... [more]
CDKA2_ORYSJ6.572e-6981.08Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
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