CF835958

Overview
NameCF835958
Unique NameCF835958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8375 contig Csv1_Contig8375:414..1140. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835958 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.827e-67
Identity = 125/194 (64.43%), Postives = 147/194 (75.77%), Query Frame = 2 
Query:  155 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXXXXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRSKTYTPSADDIGHVL 727
            MLSV+RVHLPS+IPIVGCELTPYVLLRRPD   +T+DVPESAP++GHFL+Y+W+R+QSD+KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA             R NS+GSG                     +YP+A+T+   +GGET  EVGRSKTYTP ADDI HVL
Sbjct:    1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGNDEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRSKTYTPMADDICHVL 187
[Close]
BLAST of CF835958 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.612e-60
Identity = 115/193 (59.59%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:  155 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXXXXXXXLFGRFNSTGSG-VINXXXXXXXXXXXXXXXXXPLYPAAVT-RSGGETWFEVGRSKTYTPSADDIGHVL 727
            MLSV+RVHLPS+IPIVGCELTPYVL+RRPD   TT+DVPESAP++G+FLRY+WYR+QSD+KV +CSVHP+EQATLQC+ C K +  V KSYHCSPKCF+DAWQHHR LH+RAA+              R NS GSG +                   P YP+ +T ++GGET  EVG  KTYTP+ADDI HVL
Sbjct:    1 MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYRWYRVQSDKKVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAAENNANEDDD---LNRNNSAGSGSLAGSLSGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCKTYTPTADDISHVL 190
The following BLAST results are available for this feature:
BLAST of CF835958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCR4A_ARATH8.827e-6764.43Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CCR4B_ARATH1.612e-6059.59Carbon catabolite repressor protein 4 homolog 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835958 ID=CF835958; Name=CF835958; organism=Citrus sinensis; type=EST; length=727bp
CAACTCCGGTACTATTCGTTCTCTTCTTCTTGTTCGGAATCGGACTGTGA
GACTAGATAGAGGTATTGTTGCTGTTGGTGTTGGATTGAAGGAAGAGGAT
TTGATAATATCACAGAGCGGTGACCAAAGCCAAGAGTGAAACATATAAAG
AAGCATGCTGAGTGTGCTGCGCGTGCACCTTCCGTCGGATATTCCTATTG
TAGGCTGTGAACTCACGCCGTACGTGCTCTTACGGCGCCCCGATAATGCT
GTCACCACCGAAGATGTCCCCGAGTCGGCCCCAATTGATGGTCATTTCTT
GAGATACAAGTGGTATCGTATACAAAGTGATAGAAAAGTTGCTGTATGTA
GCGTACATCCTTCTGAGCAAGCCACTCTGCAGTGTCTAGGTTGTGTTAAG
GCTAAAATACCTGTTGCCAAAAGTTACCATTGCTCACCAAAGTGCTTCTC
TGATGCATGGCAGCATCATCGTGTTCTTCACGATCGTGCTGCAAGTGCTG
TAAATGAGAATGGGAATGAAGAGGAGGAGTTGTTTGGCCGTTTCAATAGC
ACTGGATCTGGAGTTATCAATGCTAGTTTATCTGGTTCTGCCTCAAATTC
TAGCCTGACGAATGGTTCAACACCTTTATATCCTGCTGCAGTTACGCGGA
GTGGAGGTGAAACTTGGTTTGAAGTTGGACGATCAAAAACATACACTCCA
TCAGCCGATGATATTGGCCATGTCCTG
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