CF835960

Overview
NameCF835960
Unique NameCF835960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.884e-34
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVL-CSTRPMRI 775
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+  DE EQ R++TE  G +   ++P+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRL 170          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.766e-34
Identity = 79/171 (46.20%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVL-CSTRPMRI 775
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+  DE EQ R++TE  G +   ++P+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.425e-34
Identity = 79/171 (46.20%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVL-CSTRPMRI 775
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+  DE EQ R++TE  G +    +P+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 78/171 (45.61%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVL-CSTRPMRI 775
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ TYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+  DE EQ R++TE  G +   ++P+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 79/171 (46.20%), Postives = 110/171 (64.33%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVL-CSTRPMRI 775
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D  TG SKGYGFV+  DE EQ R++TE  G +    +P+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVLCSTRPMRI 775
            +LW+GDL+PWM+ ++I  ++    E V+ KV+R+K ++      Y F++F S AAAER L  +N T +P     F+LNWAT G  +        P+F+IFVGDL     D  L  TFR++Y S   AK++ D  TG S+ YGFVR   E EQ  ++  M G LC  RP+RI
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32
Identity = 68/181 (37.57%), Postives = 110/181 (60.77%), Query Frame = 2
Query:  236 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVLCSTRPMRI 775
            YG + D +     +LW+G+L+PW+ E++I  ++   G+ V  K+IRN+ T  + GY F+EF S   A   + + N   +P T   F+LNWA+ G   E+      +++IFVGDL+ +V ++ +   F + Y+S K AK++TD  T  S+GYGFVR  DE++Q  ++ EM G +C  RP+R+
Sbjct:   81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.340e-31
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  275 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTE-MNGVLCSTRPMRI 775
            SLW+GDL P+M+E++I   F   GE   G K+I ++ T  S GY F+E    A+ +R +Q  NG  +P +   + F+LN+ATYG   +R + GP+F++FVGDL ++V DY L + F   + S KGAKVVTD   G S+GYGFV+  DE+EQ +++ E  N      +P+RI
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRI 173          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.307e-22
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  269 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNG 745
            + SLW+G+L+P+M+E +I   F   GE  V  ++IR+K T  + GYGF+E     A ER L+  NG  +P  +  + F+L+ + YG    +Q +   F++FV DL  DV D +L E F   +SS    K+V D   G SK  GFV    E EQ R++ ++ G
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of CF835960 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.430e-18
Identity = 68/240 (28.33%), Postives = 104/240 (43.33%), Query Frame = 2
Query:  251 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRIGDESEQLRSMTEMNGVLCSTRPMRI 775
            + S++  R+LW+GDL P  +E+ I  I+    + V  K+IR K+              N SE                                        GY F+EF +   A+  L             T N    P+ ++ FRLNWA+    +      P+F++FVGDL+   T+  L   F+  + SVK  +V+TD  TG S+ +GFVR GDE E+ R++ EM+G     R +R+
Sbjct:   27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRV 266          
The following BLAST results are available for this feature:
BLAST of CF835960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
TSAP1_BOVIN2.884e-3446.20tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_HUMAN3.766e-3446.20tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_RAT6.425e-3446.20tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB1.096e-3345.61tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE1.096e-3346.20tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
CSX1_SCHPO7.103e-3342.11RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO4.604e-3237.57Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSP1L_DANRE1.340e-3143.27tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_DANRE3.307e-2237.65tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NGR1_YEAST8.430e-1828.33Negative growth regulatory protein NGR1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835960 ID=CF835960; Name=CF835960; organism=Citrus sinensis; type=EST; length=776bp
CTTCATCGGACCTCTAAAATCAATTAATAACGCTTTAGTAATTGATATAA
CCCTGATGCAACAACCGCCATCACAGCCTTCCGATCAGACTAGCCAGTAC
CAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTCGCAGCAGCA
GCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGATGGACTCCGC
AGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGTGTCGCCCCC
GATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGACTTGCAGCC
GTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATACTGGAGAGT
TTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTTTCAGAGGGT
TATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAGGGTTTTGCA
GACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACTTCAGACTGA
ATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGATGGTCCTGAT
TTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGACTATGTGCT
ACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTGCTAAAGTGG
TCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTTGTGAGAATT
GGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAATGGCGTGCT
CTGCTCTACTAGACCTATGCGGATTG
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