CF835985

Overview
NameCF835985
Unique NameCF835985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.356e-73
Identity = 148/217 (68.20%), Postives = 167/217 (76.96%), Query Frame = 3
Query:    9 STPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGR 659
            ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+        + G     NVRFRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPS RERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGR
Sbjct:   16 ASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGR 224          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.205e-71
Identity = 145/222 (65.32%), Postives = 159/222 (71.62%), Query Frame = 3
Query:    9 STPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGR 659
            ST FKGNV  L   P   L + L    + +  Q     L V++Q           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK KGLINPS RERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGR
Sbjct:   24 STSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGR 239          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 75/153 (49.02%), Postives = 93/153 (60.78%), Query Frame = 3
Query:  189 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 647
            L+ L PQ G+          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL + GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTN----DGPLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 72/149 (48.32%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            RL ++ PQPGS          IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L + G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTN----DGPLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 77/158 (48.73%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            R++ + P+ GS          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L  +G+I  +      PLK+LGDG L+K L  KA AFS SA+EK+ A G +  VL
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTN----DGPLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 74/155 (47.74%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.146e-27
Identity = 74/156 (47.44%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RL +L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L   G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:    4 RLESLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 71/148 (47.97%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 629
            +L+ + PQPGS          ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L    ++         PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILT----SNDGPLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
The following BLAST results are available for this feature:
BLAST of CF835985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK15_PEA2.356e-7368.2050S ribosomal protein L15, chloroplastic (Fragment... [more]
RK15_ARATH2.205e-7165.3250S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RL15_SYNP62.467e-3049.3750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE72.467e-3049.3750S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_CYAP73.938e-2849.0250S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_SYNJA6.717e-2848.3250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_CYAP86.717e-2848.7350S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_ANASP6.717e-2847.7450S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNS31.146e-2747.4450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_MICAN1.496e-2747.9750S ribosomal protein L15 OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835985 ID=CF835985; Name=CF835985; organism=Citrus sinensis; type=EST; length=661bp
GCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAA
CCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACC
ACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGCTTCAGCAA
CTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTG
GGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAAT
AGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAAT
CGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCT
CTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGC
TGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTG
GTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAATAAGGGC
TTGATCAATCCCTCATGAAGAGAAAGGAAACTGCCTTTAAAGATTCTTGG
TGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCTTCTCTA
CATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACTGTCTTA
CCTGGCCGAAA
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