CF835999

Overview
NameCF835999
Unique NameCF835999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835999 vs. ExPASy Swiss-Prot
Match: ICR1_ARATH (Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.573e-30
Identity = 88/257 (34.24%), Postives = 132/257 (51.36%), Query Frame = 2
Query:    2 HSDPYNQKKLGTRIADLQSQLGQAQEELKNLKDQLXXXXXXXXXXXXXXXXXXXXXXVPGTVEVVEQHSLPEIQESET-TKNDPKDEVAEENQPETDVFEISVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQXXXXXXXXXXXXXXXXXXXXXXRVQTDQWKKAADAAA 769
            +SDP  QKKLG RI+DL+SQLGQAQEEL+ LK+QL                           +  + + L  ++ES T  +   +DE+  + Q ETDVFE+ VEK  V            EE+E +S N   E             +L   +DEI +L+ +L + EK+ E + +EN+SLK QL++++S IS  +  ++EM   ++++GEE++ S+A+                         RVQT+QW+KAADAAA
Sbjct:   54 NSDPLGQKKLGGRISDLESQLGQAQEELRLLKEQLANAEAVKKQAQDELHK-----------KSKKPNPLARVEESATEAERIDRDEIPGDVQKETDVFEVPVEKIAV------------EEEELRSGNDEAE-------------KLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAA 274          
BLAST of CF835999 vs. ExPASy Swiss-Prot
Match: ICR4_ARATH (Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24
Identity = 77/260 (29.62%), Postives = 128/260 (49.23%), Query Frame = 2
Query:    2 HSDPYNQKKLGTRIADLQSQLGQAQEELKNLKDQLXXXXXXXXXXXXXXXXXXXXXXVPGTVEVVEQHSLPEIQESETTK-NDP---KDEVAEENQPETDVFEISVEKSTVEPEVEFSQQTFKEEKETKSINVSTEPPAEPEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQXXXXXXXXXXXXXXXXXXXXXXRVQTDQWKKAADAAA 769
            H+DP +QKKLG+RI+ L+SQLGQAQEEL+ LK QL                           E  ++ +  E+   ++ K N P   +D++  +   ETDVFE+  EK+             KE ++TK+                   EL   +D+IN+L+ +L + EK+   +++EN++LK QL +  + +S A+ +++E+   ++++GEE++ S     +                      +VQT+QW+KAADAAA
Sbjct:   59 HTDPLSQKKLGSRISGLESQLGQAQEELRLLKQQL------------------------AKAEAAKKRAQEELHRKKSKKPNTPAPERDDIPGDGHQETDVFEVLDEKA-------------KESEKTKN------------------DELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKTDTEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAADAAA 263          
The following BLAST results are available for this feature:
BLAST of CF835999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ICR1_ARATH9.573e-3034.24Interactor of constitutive active ROPs 1 OS=Arabid... [more]
ICR4_ARATH2.698e-2429.62Interactor of constitutive active ROPs 4 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02E04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835999 ID=CF835999; Name=CF835999; organism=Citrus sinensis; type=EST; length=769bp
CCATTCTGATCCCTATAACCAAAAGAAACTCGGCACCCGCATTGCGGATT
TACAATCTCAACTTGGGCAAGCTCAAGAAGAGCTAAAAAATCTGAAGGAC
CAGTTGGCTTCAGCTGAAGCTGCAAAGAAGGAAGCTCAAGAAAAGCTGGA
GAAGAAAACCAAGAAACCAGAAGTTCCAGGGACAGTGGAGGTAGTGGAAC
AGCACTCTCTACCTGAAATTCAAGAATCTGAAACAACAAAGAACGATCCC
AAGGATGAAGTTGCTGAAGAAAACCAGCCAGAGACTGATGTTTTTGAAAT
TTCAGTAGAAAAATCAACTGTTGAACCCGAGGTTGAATTCAGCCAACAGA
CATTCAAAGAAGAAAAAGAGACGAAATCAATCAATGTATCTACTGAACCT
CCAGCAGAACCTGAGCCAGAGAAAGTATCAATCCATGAGTTAACCTTGAC
AAAGGATGAGATAAATTTGCTACAAAACAAGCTAGATGAGAAGGAGAAGC
AACTAGAGGGGATGGCTCAAGAAAATAAAAGCCTGAAAAAGCAGTTGAAT
GAAGCTTCGTCGAATATTTCAACTGCTCAAAAAGAGAAAGAGGAAATGAC
TCAGAGCCTGAACAAACTGGGAGAAGAGGTGCAGGCAAGTAAAGCTGAAG
CAATTCAGTTGAAGGAGAAGTTGGAAGCTGCAGAAGGAGCAAAAAAAGCA
CTGGAAATGGAGATGAAGAAGCTTCGAGTACAGACAGACCAGTGGAAAAA
AGCAGCTGATGCCGCAGCA
back to top