CF836002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31 Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -2 Query: 170 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRKTS 598 +FKSG+ ILLATDVASRGLDIPTVDLV+NYDIPR P DY VS +T+ V LIH+IE VGK++E + K ++T+V K +RVA MK++D+GF +K K+R+K K LA+KG LKKR +++K++ Sbjct: 347 KFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKKRGKRQKST 489
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.686e-27 Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = -2 Query: 176 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFV-TQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 601 H FKS + +LLATDVASRGLDI TVDLV+NYD+PRYP DY +SF+ TQ + L+HEIE VVGKQL ++ + ++V D T+V+K RR+A MK+ D+G +K + RK+Q KKR+++RK Sbjct: 365 HNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQ-----------KKRAQERK 496
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.959e-20 Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = -2 Query: 176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 598 RF++ A IL+ATDVASRGLDIP+V LV+N+D+PR P DY +S VT+ VDL+H IE VG +L E+E E ++L I V +R A ++++D GF E+ ++R +++L LK K+K Sbjct: 303 RFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLKNSGRKKK 444
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17 Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = -2 Query: 236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601 ++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + DY ++FVTQ V+L IE ++GK+L F +++EV+ RV + +R A M+L + G EK K +++ Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHG--EKKKRKRE 426
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -2 Query: 263 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF 601 ++FK G +IL+ATDVA+RGLDIP+VDLV+NYD+P +Y ++ VTQ V++ IE V+ K+L+ F C+E+ VL + RV + R+A +L D + Sbjct: 402 NKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNY 514
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -2 Query: 236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601 ++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + DY ++FVTQ V+L IE ++GK+L F ++ EV+ RV + +R A M+L + G EK K ++ Sbjct: 307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG--EKKKRSRE 426
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -2 Query: 236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601 ++FK+ +ILLATDVASRGLDIP VD+V+N+DIP + DY ++FVTQ V+L IE ++GK+L F ++ EV+ RV + +R A M+L + G EK K ++ Sbjct: 309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG--EKKKRSRE 428
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 49/149 (32.89%), Postives = 84/149 (56.38%), Query Frame = -2 Query: 164 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLA---EKGSLKKRSEKRKTSGE 601 ++FK+G+ IL+ TDVASRGLDIP+VD+V+NYDIP DY +S V Q ++ +IE ++GK+L E+ +E EVL + RV + ++++ M + + G ++ E ++ L ++G+ ++ K K S + Sbjct: 304 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERGGNKDKKSSK 452
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16 Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = -2 Query: 176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSL--KKRSEKRK 598 +FKS IL+ATDVASRGLDIPTV +V+N++ P P Y ++ VTQ + L+H IE + K+LEEF +E EVL +T+V RR +KL F EK + K+++L + + L K+++E K Sbjct: 293 KFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAK 435
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15 Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = -2 Query: 230 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLC--DITRVYKGRRVAPMKLMDDGF*EKAKERKKQK 601 HRF++ A IL+ATDVASRGLDIPTV+LV+NYDIP P + +SFVTQ V I IE + K++ E + +T+V K +R + M + + F E+ +++KK++ Sbjct: 298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKKQ 423 The following BLAST results are available for this feature:
BLAST of CF836002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836002 ID=CF836002; Name=CF836002; organism=Citrus sinensis; type=EST; length=602bpback to top |