CF836002

Overview
NameCF836002
Unique NameCF836002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  170 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRKTS 598
            +FKSG+  ILLATDVASRGLDIPTVDLV+NYDIPR P DY                VS +T+  V LIH+IE  VGK++E +  K      ++T+V K +RVA MK++D+GF +K K+R+K K   LA+KG LKKR +++K++
Sbjct:  347 KFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKKRGKRQKST 489          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.686e-27
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = -2
Query:  176 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFV-TQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 601
            H FKS +  +LLATDVASRGLDI TVDLV+NYD+PRYP DY                +SF+ TQ  + L+HEIE VVGKQL  ++ + ++V  D T+V+K RR+A MK+ D+G  +K + RK+Q           KKR+++RK
Sbjct:  365 HNFKSSKVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQ-----------KKRAQERK 496          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.959e-20
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 598
            RF++  A IL+ATDVASRGLDIP+V LV+N+D+PR P DY                +S VT+  VDL+H IE  VG +L E+E   E ++L  I  V   +R A ++++D GF E+ ++R +++L        LK    K+K
Sbjct:  303 RFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLKNSGRKKK 444          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601
            ++FK+   +ILLATDVASRGLDIP VD+V+N+DIP +  DY                ++FVTQ  V+L   IE ++GK+L  F  +++EV+    RV + +R A M+L + G  EK K +++
Sbjct:  307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREHG--EKKKRKRE 426          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -2
Query:  263 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF 601
            ++FK G  +IL+ATDVA+RGLDIP+VDLV+NYD+P    +Y                ++ VTQ  V++   IE V+ K+L+ F C+E+ VL  + RV +  R+A  +L D  +
Sbjct:  402 NKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNY 514          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601
            ++FK+   +ILLATDVASRGLDIP VD+V+N+DIP +  DY                ++FVTQ  V+L   IE ++GK+L  F  ++ EV+    RV + +R A M+L + G  EK K  ++
Sbjct:  307 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHG--EKKKRSRE 426          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  236 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKK 601
            ++FK+   +ILLATDVASRGLDIP VD+V+N+DIP +  DY                ++FVTQ  V+L   IE ++GK+L  F  ++ EV+    RV + +R A M+L + G  EK K  ++
Sbjct:  309 NKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREHG--EKKKRSRE 428          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 49/149 (32.89%), Postives = 84/149 (56.38%), Query Frame = -2
Query:  164 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLA---EKGSLKKRSEKRKTSGE 601
            ++FK+G+  IL+ TDVASRGLDIP+VD+V+NYDIP    DY                +S V Q  ++   +IE ++GK+L E+  +E EVL  + RV + ++++ M + + G  ++  E  ++    L    ++G+ ++   K K S +
Sbjct:  304 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERGGNKDKKSSK 452          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSL--KKRSEKRK 598
            +FKS    IL+ATDVASRGLDIPTV +V+N++ P  P  Y                ++ VTQ  + L+H IE  + K+LEEF  +E EVL  +T+V   RR   +KL    F EK +  K+++L +  +   L  K+++E  K
Sbjct:  293 KFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAK 435          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = -2
Query:  230 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLC--DITRVYKGRRVAPMKLMDDGF*EKAKERKKQK 601
            HRF++  A IL+ATDVASRGLDIPTV+LV+NYDIP  P  +                +SFVTQ  V  I  IE  + K++ E        +    +T+V K +R + M +  + F E+ +++KK++
Sbjct:  298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKKQ 423          
The following BLAST results are available for this feature:
BLAST of CF836002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RH36_ARATH3.222e-3150.35DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
RH36_ORYSJ3.686e-2746.85DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
DBP8_SCHPO1.959e-2040.14ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]
DDX47_MOUSE2.027e-1740.98Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_DICDI3.458e-1739.82Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
DDX47_HUMAN7.704e-1740.98Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_BOVIN7.704e-1740.98Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
RH10_ARATH1.314e-1632.89DEAD-box ATP-dependent RNA helicase 10 OS=Arabidop... [more]
DDX49_HUMAN2.927e-1638.46Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DBP8_YEAST1.453e-1538.10ATP-dependent RNA helicase DBP8 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836002 ID=CF836002; Name=CF836002; organism=Citrus sinensis; type=EST; length=602bp
AAACTACAATGCTCAGCAAATCCCTAAATAAATATCATTTTCGGATATCA
TCATCTCTAGATGATAGAGCGTATAATTTGAGTTGTATTACAAGCAAGCC
ACTGGACAAAATGCAGCTTGACAGCACACAACCAGAGGAGAGAATATTTA
CCTTCGCTGACTACTCACCAGATGTCTTTCTCTTTTCACTTCGCTTCTTC
AATGATCCTTTTTCTGCTAACATTTACAGTTTCTGCTTTTTGCGTTCTTT
TGCCTTTTCCTAAAAGCCATCATCCATCAACTTCATTGGCGCCACACGTC
TACCCTTGTACACCCTCGTAATATCACAAAGAACCTCTTGCTCTTTACAT
TCAAATTCTTCTAGCTGTTTCCCAACAACGGCTTCTATTTCATGAATGAG
ATCTACGCCATTTTGGGTAACAAAGCTAACAGCCAAGCCACCTCTGCCTG
CTCTTGCAGTACGGCCCACGCGGTGAACATAATCTCCCGGATATCTTGGA
ATATCATAGTTTAGAACAAGATCAACTGTGGGAATATCTAAACCGCGGCT
AGCAACATCAGTCGCAAGTAATATAGTAGCTTGTCCTGATTTGAACCGAT
GA
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