CF836020

Overview
NameCF836020
Unique NameCF836020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
[Close]
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTITL  ESS TIDNVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
The following BLAST results are available for this feature:
BLAST of CF836020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_WHEAT2.352e-2087.50Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN2.352e-2087.50Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU2.352e-2087.50Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC2.352e-2087.50Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR2.352e-2087.50Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA2.352e-2087.50Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ2.352e-2087.50Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY2.352e-2087.50Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE2.352e-2087.50Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO2.352e-2087.50Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836020 ID=CF836020; Name=CF836020; organism=Citrus sinensis; type=EST; length=194bp
AGGCTCCACGTCTCAGCCTTCCAACATGCAGATCTTTGTGAAAAGTTTGA
CCGGCAAGACCATCACTCTCTAGGCGGAGAGCTCCCACACCATCGACAAC
GTCAAGGCTAAGATCCATGACAAGGAAGGGATTCCACCGGACCAGCAACG
GCTGATCTTCTCCGGAAAGCATCTCGAGGACGGGCGCACCTTGG
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