CF836039

Overview
NameCF836039
Unique NameCF836039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.963e-24
Identity = 67/155 (43.23%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  110 SQSQPTSVKFRPRPLRVSASACASTAERTRTHHHIT---SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 562
            S   P S   R  P  VSAS   +  E +   H I    +  P SLY++L +  GAT Q+IK+AYR+LAR+ HPDVA   + + +SA +FMK+H AY TLSDP+KR+ YDR + RR RP               T   S   +Y  R WETDQCW
Sbjct:   21 SPISPPSRTARISPPLVSASCSYTYTEDSPRLHQIPRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRP--------------LTVGTSGLGSYVGRNWETDQCW 161          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   50 STLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVS---ASACASTAERTRTHHH--ITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSG 481
            S L+++ H   P F   +  S  QPTS+     P  +S    +  +ST  ++R  H   +      S Y++LG+    T  EIK AY++LAR  HPDV+   + E    +F+++ EAYETLSDP++R  YDR L       G  F+ SG
Sbjct:    8 SILSTNHH---PFFYKQQPISSLQPTSI-----PTTISYPTRTRFSSTRIQSRLTHDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDL-----SMGFSFSFSG 143          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YEILG+   AT +EIK AYRKLAR  HPDV     + N+A KF +++EAYE LSDP+KRA YD+
Sbjct:    6 YEILGVARNATPEEIKKAYRKLARKYHPDV--NKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCR (Chaperone protein dnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC4 (Chaperone protein dnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC2 (Chaperone protein dnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_EXISA (Chaperone protein dnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+   A+ Q+IK AYRKLAR  HPD+   +Q  ++A KF ++ EAYE LSD +KRA YDR
Sbjct:    7 YEVLGLDKSASAQDIKRAYRKLARQYHPDI---NQEADAADKFKEIGEAYEVLSDEQKRAQYDR 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL 436
            Y+ILG+   AT +EIK AYR+LA+  HPD++A   +EN++ KF +++EAY  LSD ++R +YDR L
Sbjct:    7 YQILGVSKDATAEEIKKAYRRLAKEYHPDISA---DENASEKFKEINEAYHILSDEERRKEYDRIL 69          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACWK (Chaperone protein dnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSQGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+   A+ +E+K AYRKLAR  HPDV   ++ E++  KF ++ EAY+TLSDP+K+A YD+
Sbjct:    7 YEVLGVDRNASVEEVKKAYRKLARKYHPDV---NKEEDAEAKFKEVKEAYDTLSDPQKKARYDQ 67          
The following BLAST results are available for this feature:
BLAST of CF836039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DNJ11_ARATH9.963e-2443.23Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
DNJ20_ARATH2.720e-1335.57Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
DNAJ_CARHZ4.639e-1359.38Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_BACCR5.129e-1254.69Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC45.129e-1254.69Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC25.129e-1254.69Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_EXISA6.699e-1254.69Chaperone protein dnaJ OS=Exiguobacterium sp. (str... [more]
DNAJ_HYDTH8.749e-1250.00Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_BACWK8.749e-1254.69Chaperone protein dnaJ OS=Bacillus weihenstephanen... [more]
DNAJ_BACSK8.749e-1251.56Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836039 ID=CF836039; Name=CF836039; organism=Citrus sinensis; type=EST; length=759bp
TCAAAACAAAACACAAGAAGTAATCTAATCATCGATTCAATCCATCATGT
CTACTCTTGCATCTTCAGCCCATCTGATTGGCCCGGGATTTATCACCAAC
GAGACTCATTCACAATCACAGCCCACGTCTGTCAAATTCCGCCCCCGCCC
ACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGCGGAGAGAACAAGAA
CCCATCATCACATTACTTCTCCTGGACCCGGCTCACTCTACGAAATCCTG
GGGATTCAGACGGGTGCCACGTGTCAGGAAATCAAGACTGCTTATCGGAA
ATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCTAAGAGTCAAAATGAGA
ATTCAGCATATAAGTTCATGAAATTACACGAAGCTTACGAAACTCTATCT
GATCCCAAGAAGCGTGCGGACTACGATCGTACCCTTTTCAGGCGAAGAAG
GCCATCGGGTTCCCCATTTGCGGTCTCGGGAGTGGCAAATACGATGGCCA
CTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGCGGACATGGGAGACT
GATCAGTGCTGGTAGAAAATAAAATACATAGCTGCAACTGCAAGATTATG
TTATATGATCTTAGCTGTTCAGGAATTAGGATTAGAGATGCTGCCCTTTA
ACGTCTGGGGATTAATGCTAACGCGTGTAGCTATTTATGATTGTAATTGA
AATTTGTTAATCCAGGCGGCATTTTTACAGCCTGCAATTGCAATGGGTAC
AATGTAAAA
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