CF836047

Overview
NameCF836047
Unique NameCF836047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF7_MOUSE (Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 61/181 (33.70%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  146 PSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSAT--PASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLF 679
            PS  +    GN+   R P A  QP+ PA   + F+  D G     PAS    +           FD+E PLL+ELGI+ D IW+KT ++LNP +  + ++   +DL+GPI+  ++ G   L+AGK QFG + G   +  + ++ + N+++  N  +      SV+GYC+LP+V+L++ ++F
Sbjct:   23 PSCNDSNAYGNVYGYREPQATEQPSSPAPPEM-FLPSDYGGQLFQPASN---LDYYSQSPSVDTFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCVALGATLLMAGKAQFGYVYGMSAIGCLGIHALLNLMS--NSGVSYGCVASVLGYCLLPMVLLSSCAVF 197          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF7_HUMAN (Protein YIPF7 OS=Homo sapiens GN=YIPF7 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 64/182 (35.16%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  149 SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA----TPASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLF 679
            SG +    GN+   R   A  QP +PAS     M    G A     PAS                FD+E PLL+ELGIH D IW+KT ++LNP + V+ ++   +DL+GPI+  ++ G   LLAGK+QFG + G   +  + ++ + N+++  +  +      SV+GYC+LP+VIL+  ++F
Sbjct:   48 SGNDSNAYGNLYGSRKQQAGEQP-QPASFVPSEMLMSSGYAGQFFQPASNSD---YYSQSPYIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGATLLLAGKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCAMF 223          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_XENTR (Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 51/122 (41.80%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  332 FDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            FDDE PLL+ELGI+ D IW+KT ++L+P +V +  +   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + +Y + N+++     +     +SV+GYC+LP++IL++F+ +F  QG
Sbjct:   85 FDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGNIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSSFAVIFSLQG 204          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_XENLA (Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 51/122 (41.80%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  332 FDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            FDDE PLL+ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + +Y + N+++     +     +SV+GYC+LP++IL+ F+ +F  QG
Sbjct:   85 FDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAMGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSTFAVIFSLQG 204          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_BOVIN (Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 58/170 (34.12%), Postives = 97/170 (57.06%), Query Frame = 2
Query:  188 RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            R VP    QP +P +  I   +      TP  + G             F+DE PLL+ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+++L++F+ +F  QG
Sbjct:   49 RFVPADMMQPQQPYTGQIFQPTQTYTPTTPQPFYG-----------NNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQG 205          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_PONAB (Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  188 RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            R VP    QP +P +  I   +     A+P  + G             F+DE PLL+ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+++L++F+ +F  QG
Sbjct:   49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYG-----------NNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQG 205          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_MACFA (Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  188 RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            R VP    QP +P +  I   +     A+P  + G             F+DE PLL+ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+++L++F+ +F  QG
Sbjct:   49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYG-----------NSFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQG 205          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_HUMAN (Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  188 RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPIXXXXXXXXXXXFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            R VP    QP +P +  I   +     A+P  + G             F+DE PLL+ELGI+ D IW+KT ++L+P +V + ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+++L++F+ +F  QG
Sbjct:   49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYG-----------NNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQG 205          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_DANRE (Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 48/122 (39.34%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  332 FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNP-TVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFS-LFLPQG 691
            F+DE PLL+ELGI+ D IW+KT ++L+P + +  ++   +DL+GP+V  L+FG   LL GK+QFG + G   +  + +Y + N+++     +      SV+GYC+LP++IL++F  +F  QG
Sbjct:   86 FEDEPPLLEELGINFDHIWQKTLTVLHPLKASDGSIMNETDLAGPMVFCLAFGATLLLTGKIQFGYVYGISAIGCLGMYCLLNLMS--MTGVSFGCVASVLGYCLLPMIILSSFGVIFSLQG 205          
BLAST of CF836047 vs. ExPASy Swiss-Prot
Match: YIPF5_RAT (Protein YIPF5 OS=Rattus norvegicus GN=Yipf5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 44/116 (37.93%), Postives = 79/116 (68.10%), Query Frame = 2
Query:  332 FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNP-TVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 676
            F++E PLL+ELGI+ D IW+KT ++L+P R +  ++   +DL+GP+V  L+FG   LLAGK+QFG + G   +  + ++ + N+++     +      SV+GYC+LP+++L++F++
Sbjct:   86 FEEEPPLLEELGINFDHIWQKTLTVLHPLRASDGSIMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAV 199          
The following BLAST results are available for this feature:
BLAST of CF836047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YIPF7_MOUSE1.354e-2133.70Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1[more]
YIPF7_HUMAN5.146e-2135.16Protein YIPF7 OS=Homo sapiens GN=YIPF7 PE=1 SV=2[more]
YIPF5_XENTR1.956e-2041.80Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 ... [more]
YIPF5_XENLA3.336e-2041.80Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1[more]
YIPF5_BOVIN4.357e-2034.12Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1[more]
YIPF5_PONAB5.690e-2034.12Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1[more]
YIPF5_MACFA5.690e-2034.12Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2... [more]
YIPF5_HUMAN5.690e-2034.12Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1[more]
YIPF5_DANRE4.817e-1939.34Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1[more]
YIPF5_RAT6.291e-1937.93Protein YIPF5 OS=Rattus norvegicus GN=Yipf5 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836047 ID=CF836047; Name=CF836047; organism=Citrus sinensis; type=EST; length=692bp
TTAACGCATGCCCTTTAAGTCTGAAACGAAAGAAAACCCCAAGCGAAGGG
ACCATTTCATTCAATTAATCAAACCCTAATTTGAATCCCCAAAAGGATTT
CAGGTAACGATGACGAAGGAATTTTCGGTCCCACCAGTAGTATTCCCTTC
GGGCGGCAATCCTACCACCGCCGGCAACATTAACCAGCGCCGGGTCCCAA
CGGCGCCGTTTCAGCCCAACCGACCTGCGAGCTCCGCGATCCCCTTCATG
TCCTTCGATATCGGTTCCGCAACTCCGGCGTCCTACGGTGGTCCAATTTC
CACTTCCACGTCAGCCGGTGGGTCAGCGTCATTCGACGACGAAGAGCCTC
TACTCGACGAGCTCGGTATCCACCCAGACCAAATCTGGAAAAAGACAAAG
TCAATTTTAAATCCGTTTCGTGTAAATCCGACGGTTCACAAAGGTTCGGA
TCTATCCGGCCCGATTGTACTTTACCTTTCATTCGGACTCTTTCAACTCC
TCGCTGGCAAGCTTCAATTCGGCGTGATTCTTGGTTGGATCGTGGTCTCG
TCGATCTTTTTGTATGTTGTTTTTAACATGCTAGCGGGACGTAATGGGAA
TCTTGACTTGCACACGTGTACCAGCGTGGTTGGTTACTGTATGCTACCGG
TGGTGATCCTAGCGGCATTTTCTCTGTTCTTGCCGCAAGGTG
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