CF836051

Overview
NameCF836051
Unique NameCF836051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836051 vs. ExPASy Swiss-Prot
Match: RKM3_YEAST (Ribosomal N-lysine methyltransferase 3 OS=Saccharomyces cerevisiae GN=RKM3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 55/194 (28.35%), Postives = 90/194 (46.39%), Query Frame = 3 
Query:   18 VPLADLFNHNPGAEDVHFTSVSSHCQSDSDADNDDHVVA-------NSDDNEP---STEHPHGDGEEFSAPSNG-----KSPLGGSDLESSALEDVPTVLQMIMVKDVRAGAEVFNTYGLIGNAALLHRYGFTEPDNQFDIVNIDMELVLKWSSSLFSSRYIRARLSLWRKLG---YSACQSQNSEYFELTSDG 545
            VP+ADLFNH+    D+ F S+   C    + D   H++A       N D N P   S E    D +   +  N       +     + +   +E+    + +++  DV  G E+FN+YG + N  LL RYGFT P+NQ+DIV++  + +      L      + ++  W ++G   +SA  +Q  +  E   DG
Sbjct:  217 VPIADLFNHHVSDPDLKFVSLYDVCDKCGEPDMCKHLIAEEYLEAENLDKNMPKVASMETRVIDEDLIKSLENDLEKEYSNVTANIEDDDGGIENPDECVDLVLKNDVAQGQEIFNSYGELSNVFLLARYGFTVPENQYDIVHLGPDFM----KILKKEEKYQEKVKWWSQVGHGLFSAWYAQMRQEDEEDEDG 406
The following BLAST results are available for this feature:
BLAST of CF836051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RKM3_YEAST9.949e-1428.35Ribosomal N-lysine methyltransferase 3 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02F10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836051 ID=CF836051; Name=CF836051; organism=Citrus sinensis; type=EST; length=679bp
TCTCTCCCTTTATCTCTGTCCCTTTGGCAGACCTCTTTAACCATAACCCT
GGGGCCGAGGATGTACACTTCACCTCTGTATCTTCACATTGTCAATCTGA
CAGTGATGCTGACAATGATGATCATGTGGTTGCCAATTCTGATGATAATG
AACCATCAACTGAACATCCTCACGGGGATGGAGAAGAATTTTCTGCTCCT
TCCAATGGGAAGAGTCCTTTGGGTGGAAGTGACTTGGAATCTTCGGCTTT
GGAGGATGTCCCAACAGTGTTGCAAATGATCATGGTGAAAGATGTCAGAG
CTGGAGCTGAGGTCTTCAATACATATGGGTTGATAGGAAATGCTGCACTG
CTCCACAGATATGGGTTCACAGAGCCGGACAATCAATTTGACATTGTGAA
CATTGATATGGAACTGGTGCTTAAATGGAGTTCATCTTTATTTTCTAGCC
GGTATATTAGAGCAAGGCTATCCTTGTGGAGAAAATTAGGTTACTCTGCA
TGTCAAAGCCAGAACTCTGAATATTTTGAGTTAACTTCTGATGGAATGCC
CCAAATTGAGCTGCTTATATTGTTATACATCATGTTACTAACTGAAAATG
TGTATCATAAGCTGGATCTTAAGTTATCGACTATGGAGAGTTACGATGAA
GCCTTATGCATAATTTTGTCTGAGAAAAA
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