CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 7.756e-70
Identity = 129/139 (92.81%), Postives = 135/139 (97.12%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLKR+PMALIKK RKAKREAP+GEKPEPV THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   13 PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.947e-69
Identity = 127/141 (90.07%), Postives = 133/141 (94.33%), Query Frame = -3
Query:  118 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 540
            G+PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKK RKAKREAP GEKPEPV THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   12 GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.027e-69
Identity = 127/141 (90.07%), Postives = 133/141 (94.33%), Query Frame = -3
Query:  118 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 540
            G+PKKRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALIKK RKAKREAP GEKPEPV THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   12 GVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.566e-69
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            PKKRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPMALIKK RKAKR+AP GEKPEPV THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   15 PKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 2.495e-68
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            PKKRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALIKK RKAK++AP GEKPEPV THLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.811e-65
Identity = 122/141 (86.52%), Postives = 128/141 (90.78%), Query Frame = -3
Query:  118 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 540
            G+ KKRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALIKK RKAK EAP GEKP  V THLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   10 GIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.869e-64
Identity = 122/141 (86.52%), Postives = 128/141 (90.78%), Query Frame = -3
Query:  118 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 540
            G+ KKRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALIKK RKAK EAP GEKP  V THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:    9 GIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.954e-61
Identity = 114/140 (81.43%), Postives = 125/140 (89.29%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            L KKRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALIKK RKAK +AP GEKPE V THLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYL EFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.045e-59
Identity = 108/140 (77.14%), Postives = 125/140 (89.29%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            L KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKK RKAK+EA   EKP+ V THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   13 LKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PICMA7.756e-7092.8140S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS151_ARATH2.947e-6990.0740S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS154_ARATH5.027e-6990.0740S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS15_ELAOL6.566e-6992.0940S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_ORYSJ2.495e-6889.9340S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS153_ARATH9.811e-6586.5240S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH4.869e-6486.5240S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH2.954e-6181.4340S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_PODAN8.045e-5977.1440S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_RAT1.792e-5877.5440S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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