CF836068

Overview
NameCF836068
Unique NameCF836068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.704e-31
Identity = 80/177 (45.20%), Postives = 93/177 (52.54%), Query Frame = -3
Query:  231 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGSGSRVLPDXXXXXXXXXXXXXXXXGTLPIRASGVGHHPNNNLIFNPVHNLRVSSFEGQAPYTLEMLQGSGSFGFPGYGNALGFYMNEGQQQDNV----------FSRAKEEPRDHDPFFESLL 731
            QKVVKGNPNPRSYYKCT  GCPVRKHVERASHD RAVI TYEGKHNHDVPAA GSG                       ++PIR + +  H N              +   QAPYTL+ML  + +   P      G+ MN      N+          FSRAKEEP +   FF+S +
Sbjct:  372 QKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG------------YATNRAPQDSSSVPIRPAAIAGHSN-------------YTTSSQAPYTLQMLHNNNTNTGP-----FGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETSFFDSFM 518          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  567 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGS 731
            QKVVKGNPNPRSYYKCT PGC VRKHVERASHD ++VI TYEGKHNHDVPAA  S
Sbjct:  497 QKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNS 551          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 61/136 (44.85%), Postives = 70/136 (51.47%), Query Frame = -3
Query:  351 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGSGS-----RVLPDXXXXXXXXXXXXXXXXGTLPIRASGVGHHPNNNLIFNPVH----NLRVSSFEGQAPYTLEMLQGSGSFG 731
            QKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVI TYEGKH+HDVP +  S +     R  PD                G  P  AS    H N  L+ N  H    N R       + Y   +  G   +G
Sbjct:  391 QKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRFRPDETDTISLNLGVGISSDG--PNHASNEHQHQNQQLV-NQTHPNGVNFRFVHASPMSSYYASLNSGMNQYG 523          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = -3
Query:  576 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAA 731
            QKVVKGNP+PRSYYKCT P C VRKHVERAS D +AVI TYEGKHNHDVPAA
Sbjct:  316 QKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAA 367          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = -3
Query:  546 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGSGSRVLPD 731
            QKVVKGNP PRSYYKCT P C VRKHVERA+ D +AV+ TYEGKHNHDVPAA  S  ++ P+
Sbjct:  425 QKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPN 486          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = -3
Query:  567 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGS 731
            QKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+ TYEGKHNHD+PAA  S
Sbjct:  419 QKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSS 473          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  567 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAACGS 731
            QKVVKGNPNPRSYYKCT  GC V KHVERAS DF++V+ TY GKH H VPAA  S
Sbjct:  382 QKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNS 436          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  582 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVP 731
            QK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +I TYEGKH+HD+P
Sbjct:  317 QKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 366          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = -3
Query:  582 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVP 731
            QKVVKGNPNPRSYYKCT  GC VRKHVERA  D ++VI TYEGKH H +P
Sbjct:  244 QKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIP 293          
BLAST of CF836068 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  576 QKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVIPTYEGKHNHDVPAA 731
            QKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+ TYEG+HNHD+P A
Sbjct:  338 QKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389          
The following BLAST results are available for this feature:
BLAST of CF836068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
WRK33_ARATH2.704e-3145.20Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY2_ARATH5.111e-2285.45Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK20_ARATH1.644e-2044.85Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK58_ARATH1.392e-1984.62Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRKY3_ARATH5.289e-1970.97Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY4_ARATH6.907e-1978.18Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK34_ARATH4.950e-1774.55Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRKY1_ARATH1.440e-1670.00WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK26_ARATH3.208e-1676.00Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK25_ARATH4.190e-1671.15Probable WRKY transcription factor 25 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836068 ID=CF836068; Name=CF836068; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTCCTTTTTAACCCATTAAAGCTTCTATATGTATA
TATACCTACAATTTTGAATATACATTACAAAATGGGGTAAAAATATACAA
ACAAACAAACAAACAAAATGCAATTAACAAATGAAGGGAATATTCTTATT
CTTCTGAATTCTATCAGTCTAACTCCCTTCCAAATGGGTAGAAACTGTAA
AATCTTTCCAATTCTGGGCAAGTTTCAAAATAGCAATGACTCAAAAAATG
GGTCATGATCCCTTGGTTCTTCCTTGGCTCTTGAAAACACATTGTCTTGC
TGCTGACCCTCATTCATATAAAACCCCAAAGCATTTCCATATCCAGGAAA
GCCAAAGCTGCCGCTGCCCTGCAACATTTCAAGGGTATAGGGGGCTTGGC
CTTCAAATGAGGATACCCTCAAATTGTGAACAGGATTGAAAATCAAGTTG
TTGTTAGGATGATGACCCACCCCCGATGCCCTTATGGGCAGCGTCCCGTT
GTTGTTACTATTGCCGTTACTGTTACGGTTATTATTGCTGCTGTTATCCG
GCAAAACCCTGCTGCCGCTGCCGCAAGCTGCCGGAACATCATGGTTGTGC
TTTCCCTCATAGGTTGGGATCACTGCTCTAAAATCGTGGGATGCTCTCTC
AACATGCTTTCTCACTGGACAACCTGGATGCGTACACTTGTAATAACTCC
TTGGATTTGGATTCCCCTTTACAACTTTTTGGC
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