CF836073

Overview
NameCF836073
Unique NameCF836073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.126e-85
Identity = 167/202 (82.67%), Postives = 182/202 (90.10%), Query Frame = 1
Query:  136 MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKNVEIDALRII 732
            MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPL+YTQVSV+ADDILKNVE DALRI+
Sbjct:    1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIV 202          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.986e-79
Identity = 152/200 (76.00%), Postives = 176/200 (88.00%), Query Frame = 1
Query:  136 MAMAALRREGRRFATPLISPRPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKNVEIDALRII 732
            MAMA  RREGRR   P I+ RPIAAIRSP  S+ E+  LGVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPL+Y QVSVLADDILKNVE DALRI+
Sbjct:    1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIV 199          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  253 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS 176          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  253 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++       +    D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K IL R       +   ++ + P  +   SV+A ++L +
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAPE----DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNS 176          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  277 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL R       +   ++ + P  +   SV+A ++L +
Sbjct:    6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNS 151          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 53/159 (33.33%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  253 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  ++    S  L++     + +    D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNS 176          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  253 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNS 176          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  253 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKN 705
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNS 176          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 51/167 (30.54%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SKKDIELIITELQKNPLHYTQVSVLADDILKNVEI 714
            S + ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  + Y     +A D+L   ++
Sbjct:    3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDV 167          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI-ELIITELQKNPLHYTQVSVLADDILKNVE 711
            S + +++R+ SVK+ QKITKA +MVAA+KLR  Q  AE +R    P+   L D     A                  +K+++V +++DKGLCGG+NS  VK +K+  K      K+ ++ ++G+K +A + RD +K I +   T   K P  + +   +A++++   E
Sbjct:    3 SLKELKDRIGSVKSTQKITKAKQMVAAAKLRRAQANAEAAR----PYAERLADVMASLAGKVSGDSAPRLLAGSGNDQKHLLVVVNTDKGLCGGLNSNIVKEAKAQAKKLIAAGKDVQFYLVGKKGRAPIKRDYEKQIAKHFDTSTVKQP-GFEEADAIANELIDMFE 165          
The following BLAST results are available for this feature:
BLAST of CF836073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATPG3_IPOBA1.126e-8582.67ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH5.986e-7976.00ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_BOVIN2.096e-1536.13ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_MOUSE7.964e-1534.59ATP synthase subunit gamma, mitochondrial OS=Mus m... [more]
ATPG_RAT1.358e-1434.93ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]
ATPG_MACFA1.358e-1433.33ATP synthase subunit gamma, mitochondrial OS=Macac... [more]
ATPG_HUMAN2.317e-1434.19ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_PONAB3.026e-1434.19ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]
ATPG_ROSDO6.742e-1430.54ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_ERYLH8.805e-1432.14ATP synthase gamma chain OS=Erythrobacter litorali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836073 ID=CF836073; Name=CF836073; organism=Citrus sinensis; type=EST; length=734bp
CGGCAAAAGTGCAATTAGGTGAAATTTGTTCGACACCTGAGCTCGCACGA
CCCAAACAGAACATAAAGCTTTGGATCTGCAGCGTTCAAAATAAAATATT
TCTAGGGTTTCCTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCT
CTGAGGCGCGAAGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCC
AATCGCCGCAATCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGG
GAGTCCGGTCTATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTT
AAGAATATTCAGAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAA
GTTAAGAGCAATTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGC
CATTCACTGCACTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAAT
GTTATTGTGACCATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTC
TACTGCAGTTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCG
ACAAAGAAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTA
GTACGTGACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAA
AAATCCTCTNCATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAA
AGAATGTAGAAATTGATGCTTTGAGGATTATCTA
back to top