CF836074

Overview
NameCF836074
Unique NameCF836074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836074 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 59/161 (36.65%), Postives = 65/161 (40.37%), Query Frame = -3 
Query:  273 AFSSYQALGGHKASHRKGSGGGEEHXXXXXXXXXXXXXXT-------------GVPNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXHRDFDLNLPVLPEL------SPAFFFSGDDEVESPLPAKKPRL 665
            +FSSYQALGGHK SHR                                         AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE            +  D+EV+SPL  KKPRL
Sbjct:   98 SFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of CF836074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT3.186e-1736.65Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836074 ID=CF836074; Name=CF836074; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTATAATAATTTGCGTTTTTCTTAATTAATTAAAG
TCGAAAAAAATTAATTGAATAAATCACAATCACGAAGTCACAGCTGAGCA
ACTGTGAGAATCTCAAATGCTTATGTACACAAAAAAATTAGTCACTGACG
CAAGTAACAGTAAAGAAATACACGAAATATATTTGCCTAAACTTAACATC
CTTAAAAGTAGCCCAAAAACAAAAAAAAAGTGGCAATTAAGTAAATTAAA
CTTCGATTTTGGGGGGCAAGAAGAGACGCGGCTTCTTCGCCGGCAGTGGA
CTCTCCACCTCGTCATCACCAGAGAAGAAGAAAGCAGGGGAGAGCTCCGG
TAAGACAGGGAGGTTGAGGTCAAAGTCACGGTGGCTGACTTGGCTGTGAG
TGCTACTGGACCCGGATGACGTCACTCCGCTCTTCTCGCCGCCATCGTAG
TGACAACGTTTGTGTCCGCCCAAGGCTTGGCCGGTGGGGAAGGACTTGTG
ACAGATGGAACACTCGTGGGTCCTACCAGTGGCGTTCGGTACGCCGGTGG
TCGTGGCGGTTGCGTTGGTGTTGGTGGTAGTGGAAGCGGAGTGTTCCTCG
CCGCCCCCAGATCCCTTACGGTGGCTGGCCTTGTGACCACCCAAGGCTTG
GTAAGAAGAAAACGCCT
back to top