CF836104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31 Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2 Query: 5 ATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 331 A +KE +D++S+YVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V NALLLN + LH R LKV+ KRTN+PGM + RGR RGR Sbjct: 44 ALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26 Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 358 EK+E+D RS+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++ET GR +KV KRTN+PG+ FRGR R N + RG+RP G PF Sbjct: 86 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 358 EK+E+D RS+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++ET GR +KV KRTN+PG+ FRGR R N + RG+RP G PF Sbjct: 86 EKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334 EK+E+D+RS+YVGNVDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET GRQ+KV +KRTN PG+ +F RG R Sbjct: 89 EKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334 EK+E+D+RS+YVGNVDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET GRQ+KV +KRTN PG+ +F RG R Sbjct: 89 EKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25 Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM---------KQFRGRRPNTFGFRGR 331 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSR 275
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25 Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 331 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25 Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 331 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25 Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 2 Query: 11 HAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334 + ++EE+DSRS+YVGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEFV +++ NA+ LN++ + RQLK++ KRTN+P + P GFRG R Sbjct: 92 NTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200 The following BLAST results are available for this feature:
BLAST of CF836104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836104 ID=CF836104; Name=CF836104; organism=Citrus sinensis; type=EST; length=727bpback to top |