CF836161
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 398.667 bits (1023), Expect = 2.022e-110 Identity = 194/237 (81.86%), Postives = 203/237 (85.65%), Query Frame = -2 Query: 94 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPNQDDFD 804 RQRWAAMRGVDECEM+ NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPF+ER EAFGL+AEDVKYVTQHFRYTFV EKVKRSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSLSFI LGED+LRLY A+LTSPKPN DDFD Sbjct: 456 RQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 8.615e-61 Identity = 114/232 (49.14%), Postives = 150/232 (64.66%), Query Frame = -2 Query: 109 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXLGEDRLRLYTALLTSPKPN 804 RQRW A+ G DE E+I +LP GLRRDIK +LC DL+ +VPLF+ MDDL+L+NICDR K +F+K E I +EGDPVQRM+F++RG ++ Q L + + L PG + GDELLSWCLRRPF++R EAF L +ED++Y+T HFRY F E++KR+ARYYS WRTWAAV IQ+AWRR + R ++ E RL Y A+ S +P+ Sbjct: 491 RQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPH 722
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41 Identity = 92/200 (46.00%), Postives = 121/200 (60.50%), Query Frame = -2 Query: 205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798 +W A RGVDE ++ +LP LRRDI+ HLCLDLVR+VPLF MDD +L+ IC+R+ S + T+G I +EGDPV MLF++RG L+SS + L PG+F G+ELL+W L EAF L+A D+K+V FR K K++ + RYYS WRTWAA +Q+AWRRYK + SLS Sbjct: 443 KWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFRRLHSK-KLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLS 641
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.995e-41 Identity = 88/199 (44.22%), Postives = 122/199 (61.31%), Query Frame = -2 Query: 208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798 +W A RGVDE ++ +LP LRRDIK HLC DLVR+VPLF MD+ +L+ IC+R+K + T+G + +EGDPV MLF++RGHL S + + C++GPG+F G+ELL+W L + EAF L+AED+++V FR K+ ++ R+YS WRTWAA IQ AWRR++ R T L Sbjct: 433 KWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFRRLHTKQ-LRHKFRFYSHQWRTWAACFIQAAWRRHRKRKYKTEL 630
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.206e-40 Identity = 90/202 (44.55%), Postives = 121/202 (59.90%), Query Frame = -2 Query: 199 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFI 798 +W A RGVDE ++ +LP LRRDI+ HLCLDLVR+VP F MDD +L+ IC+R+ S + T+G + +EGD + MLF++RG L+SS + +L PG+F G+ELLSW L EAF L AED+K+V FR K K++ + R+YS WRTWAA IQ AWRRYK R+ +L+ I Sbjct: 443 KWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSK-KLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAI 643
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 2.697e-38 Identity = 85/199 (42.71%), Postives = 120/199 (60.30%), Query Frame = -2 Query: 208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798 +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K +FT+ + +EGDPV MLF++RG L+S + + + +L G+F GDELL+W L EAF L A+++K+V FR ++ V+ + R+YS WRTWAA +Q AWRRY R L L Sbjct: 476 KWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAACFMQAAWRRYIKRKKLEQL 673
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38 Identity = 83/199 (41.71%), Postives = 121/199 (60.80%), Query Frame = -2 Query: 208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798 +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K ++T+ + +EGDPV MLF++RG L+S + + + +L G+F G+ELL+W L EAF L A+++K+V FR ++ V+ + R+YS WRTWAA+ IQ AWRRY + L L Sbjct: 475 KWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQL 672
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38 Identity = 83/193 (43.01%), Postives = 120/193 (62.18%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W RGVDE ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K +FT+ I +EGDPV M+F++RG L+S + + + +L G+F G+ELL+W L EAF LEAE++K+V FR ++ V+++ R+YS WRTWA+ IQ AWRRY R Sbjct: 464 KWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWASCFIQAAWRRYSRR 655
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37 Identity = 83/193 (43.01%), Postives = 120/193 (62.18%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W RGVDE ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K ++T+ I +EGDPV MLF++RG L+S + + + +L G+F G+ELL+W L EAF LEAE++K+V FR ++ V+++ R+YS WRTWAA IQ AWRR+ R Sbjct: 470 KWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQ-VQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.086e-37 Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = -2 Query: 235 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 798 +W RGVDE ++SNLP+ LRRDIK HLCL L+ +VP+F+ MD+ +L+ +CDR++ +++T+ I +EGDPV MLF++RG L + I N ++ + LG G+F G+ELL+W L EAF L+A+D+K+V FR K+ ++ + RYYS W+TWAA IQ AWRRY Sbjct: 448 KWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQ-LRHTFRYYSQQWKTWAACFIQAAWRRY 636 The following BLAST results are available for this feature:
BLAST of CF836161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836161 ID=CF836161; Name=CF836161; organism=Citrus sinensis; type=EST; length=805bpback to top |