CF836218

Overview
NameCF836218
Unique NameCF836218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.374e-86
Identity = 158/207 (76.33%), Postives = 177/207 (85.51%), Query Frame = 3
Query:   60 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MSSQI               KN+RF+SEGRA+ AAAAV+ SGK+P   S+F R+ GS  AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQKSEPGTIRGDLAV VGRNIIHGSDGP
Sbjct:    1 MSSQICRSASKAAKSLLSSAKNARFFSEGRAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGP 207          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.191e-83
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 3
Query:   60 MSSQIVXXXXXXXXXXXXXXKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MSSQI               KN+RF+SEGRA+ AA+ V  +GK+P   S+FG++GS   S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP
Sbjct:    1 MSSQICRSASRAARSLLSSAKNARFFSEGRAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 206          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.833e-79
Identity = 146/185 (78.92%), Postives = 161/185 (87.03%), Query Frame = 3
Query:  123 NSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            +SRF  EGR V+A AAV+   K PYL S     G + AS +W+S A+AIPAAAY LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP
Sbjct:   24 SSRFLPEGRTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 204          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 3
Query:  312 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVV GRNIIHGSDGP
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGP 122          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.548e-46
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 674
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDG
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDG 121          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.548e-46
Identity = 85/120 (70.83%), Postives = 102/120 (85.00%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDL + +GRN+IHGSDGP
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGP 122          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 86/119 (72.27%), Postives = 103/119 (86.55%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 674
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDG
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDG 121          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.868e-45
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  +EPGTIRGDLAV +GRN+IHGSDGP
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGP 122          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 83/119 (69.75%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  321 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P ++EPGTIRGDLA+ +GRN+IHGSD P
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAP 122          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 85/119 (71.43%), Postives = 101/119 (84.87%), Query Frame = 3
Query:  321 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            ERTFIAIKPDGVQRGLI EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLA+ +GRN+IHGSD P
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAP 122          
The following BLAST results are available for this feature:
BLAST of CF836218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH4.374e-8676.33Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH1.191e-8373.79Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL8.833e-7978.92Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL1.982e-5483.61Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMT7.548e-4673.11Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA7.548e-4670.83Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM19.857e-4672.27Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM2.868e-4571.67Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS34.892e-4569.75Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPW4.892e-4571.43Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836218 ID=CF836218; Name=CF836218; organism=Citrus sinensis; type=EST; length=677bp
CGTTTACTCTCTTGTTTCAGCTTAAATTTGAGTCTTGAGAATCCAATCCA
ATCCCAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAG
GTCTCTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAG
CTGTATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTT
GTTTCAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCT
CTCGGGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGG
AAGTACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGAT
GGGGTGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAA
AGGCTTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTG
CACAAAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTG
TGCGAGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGA
GGGAGTTATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGA
AATCAGAACCTGGAACAATCAGAGGCGATCTAGCTGTTGTTGTTGGAAGA
AACATCATTCATGGAAGTGATGGCCCC
back to top