CF836219

Overview
NameCF836219
Unique NameCF836219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836219 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.056e-55
Identity = 114/193 (59.07%), Postives = 136/193 (70.47%), Query Frame = -2 
Query:  161 IRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLA-----YHHQQQQFSXXXXXXXXXXXXXYLHLTAAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 724
            IRYRECLKNHAV+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+     A     Y+++  Q               YLHLT+  P     P +++G    +EED SNP         T KR RTKFTAEQKEKML FAE+LGWRIQKHD+ +VEQFCAETGV+R VLK+WMHNNK++LGKKP
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNRPPQ---------PHQPPGYLHLTS--PAAPYRPPAASG----DEEDTSNPSSSGG----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220
[Close]
BLAST of CF836219 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.082e-48
Identity = 99/191 (51.83%), Postives = 118/191 (61.78%), Query Frame = -2 
Query:  161 RYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQQQFSXXXXXXXXXXXXXYLHL----TAAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXGTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDEASVEQFCAETGVKRHVLKVWMHNNKHTLGKKP 721
            R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE        +HH   Q                +      + A P  LALP        RE  +            G +KRHRTKFTAEQKE+ML  AE++GWRIQ+ D+  +++FC ETGV R VLKVW+HNNKHTLGK P
Sbjct:   74 RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELP-----YFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQ-----RERSEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254
The following BLAST results are available for this feature:
BLAST of CF836219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH2.056e-5559.07ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH7.082e-4851.83ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02J20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836219 ID=CF836219; Name=CF836219; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTGAAGTAAAAAGGGAGTAATTAATTAATTAATTAAAGAAAACTG
TCCTATATATATCTCTGCTAAATTGAAGTCAATGGAATAGAATTTTGTTT
GTTCAGTCCCAATGATACTGTTTCTTCGATCGAGGTTGTTATTTCTTGGA
GAAATTATTAGGGTTTCTTACCAAGTGTGTGCTTGTTATTATGCATCCAA
ACCTTAAGCACATGCCTTTTGACACCAGTCTCAGCGCAGAACTGCTCCAC
TGAAGCCTCATCGTGCTTCTGGATTCTCCAGCCCAGCTGCTCAGCAAACC
CTAGCATCTTCTCCTTTTGCTCAGCTGTGAACTTCGTTCTGTGCCTTTTC
TTCGTTCCGCCACTTCCCCCGCCGCTGCTGCTTGGATTCGACACATCTTC
CTCTTCTCTACTATAGCCACCGGCTGACGACGACGGAAGCGCTAACGGCC
TCGGCTGGGCAGCTGTCAAGTGCAAGTACCCAGCTGGAGCCGGAGGCGGA
GGCCCCCGATAGTAAGGCGAGAATTGCTGCTGCTGGTGATGGTAGGCCAA
CGGCGAGGCGCCGTCAGTTTCCTTACGGTGGAAATTCCTGTGGCAGTTAC
ACGCGGCGCATTTGAGGGATTCGAGTGTGCCTTCGTCGCCAGCTGCCATG
AACTCCCCGCATCCGTCAACCGCGTGTCCACCGATGCTGACAGCGTGATT
CTTAAGACACTCCCGGTACCTGATGGATTTT
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