CF836220

Overview
NameCF836220
Unique NameCF836220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836220 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.075e-28
Identity = 74/144 (51.39%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  222 ATGPTAGGEGASAAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLA-----YHHQQQQFSXXXXXXXXXXXXXXLHLT--AAQPRPLALPSSSAGGYSREEEDVSNPSSSGG 632
            AT    GG G S      IRYRECLKNHAV+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+     A     Y+++  Q                LHLT  AA  RP A         S +EED SNPSSSGG
Sbjct:   29 ATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNRPPQ---------PHQPPGYLHLTSPAAPYRPPAA--------SGDEEDTSNPSSSGG 155          
BLAST of CF836220 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 63/161 (39.13%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  207 TNASKATGPTAGGEGAS-----AAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQQQFSXXXXXXXXXXXXXXLHL----TAAQPRPLALPSSSAGGYSREEEDVSNPSSSGGGKWRNEEKAQ 662
            T + + TG T+ G G              R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE        +HH   Q                +      + A P  LALP        R E+ +   S+  GG  R   + +
Sbjct:   45 TESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELP-----YFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQR---ERSEDPMETSSAEAGGGIRKRHRTK 197          
The following BLAST results are available for this feature:
BLAST of CF836220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH1.075e-2851.39ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH8.818e-2339.13ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02J20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836220 ID=CF836220; Name=CF836220; organism=Citrus sinensis; type=EST; length=672bp
TTTAGGTTAGGCTATCTTATTAGAGCTTAGAGCTGGATCTGCTTACTAGT
AAGTAGTAACCCCCCGGCCATGTAGATCTTCTCCATCAACAATTAACAAA
AATTAAAGAGATTGAAGATTATTAATTAAGAGAGGAGGAGATGGAATTTG
AGGAGCACGAAGAGCAAGAGGTAGAAGAAATGGGGGCAGCGGAGTACGAG
TCAATGACCAACGCGTCAAAGGCAACGGGCCCCACCGCAGGAGGAGAAGG
TGCATCGGCGGCGGCCAGAAAATCCATCAGGTACCGGGAGTGTCTTAAGA
ATCACGCTGTCAGCATCGGTGGACACGCGGTTGACGGATGCGGGGAGTTC
ATGGCAGCTGGCGACGAAGGCACACTCGAATCCCTCAAATGCGCCGCGTG
TAACTGCCACAGGAATTTCCACCGTAAGGAAACTGACGGCGCCTCGCCGT
TGGCCTACCATCACCAGCAGCAGCAATTCTCGCCTTACTATCGGGGGCCT
CCGCCTCCGGCTCCAGCTGGGTACTTGCACTTGACAGCTGCCCAGCCGAG
GCCGTTAGCGCTTCCGTCGTCGTCAGCCGGTGGCTATAGTAGAGAAGAGG
AAGATGTGTCGAATCCAAGCAGCAGCGGCGGGGGGAAGTGGCGGAACGAA
GAAAAGGCACAGAACGAAGTTC
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