CF836226

Overview
NameCF836226
Unique NameCF836226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836226 vs. ExPASy Swiss-Prot
Match: RWDD1_MOUSE (RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 56/170 (32.94%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   25 LNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMPESALTAPKEKKLTGRQWFES 522
            L+ S   F +T++ +  E DE+    V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E F                  M E       + KL+G+Q FE+
Sbjct:   26 LSESPPSFTITVTSEAGENDET----VQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189          
BLAST of CF836226 vs. ExPASy Swiss-Prot
Match: RWDD1_RAT (RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   25 LNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMPESALTAPKEKKLTGRQWFES 522
            L+ +   F +T++ +  E DE+    V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E F                  M E       + KL+G+Q FE+
Sbjct:   26 LSENPPSFTITVTSEAGENDET----VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189          
BLAST of CF836226 vs. ExPASy Swiss-Prot
Match: RWDD1_HUMAN (RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   25 LNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMPESALTAPKEKKLTGRQWFES 522
            L+ +   F +T++ +  E DE+    V+  L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E F                  M E       + KL+G+Q FE+
Sbjct:   26 LSENPPSFTITVTSEAGENDET----VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189          
The following BLAST results are available for this feature:
BLAST of CF836226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RWDD1_MOUSE8.270e-1532.94RWD domain-containing protein 1 OS=Mus musculus GN... [more]
RWDD1_RAT1.842e-1432.35RWD domain-containing protein 1 OS=Rattus norvegic... [more]
RWDD1_HUMAN1.842e-1432.35RWD domain-containing protein 1 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02J23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836226 ID=CF836226; Name=CF836226; organism=Citrus sinensis; type=EST; length=748bp
GAAATTCACTCTGTTGAGAGTGGATTAAATACTTCCAATCAATGTTTCCA
AGTAACGTTATCTCCACAGGATGATGAGGCAGATGAGTCAACAATGCCTC
CAGTTGAGTTGGCTTTAATTTTCTCACACACAGAGAAGTATCCTGATGAA
CCTCCACTTTTGAATGTAAAAAGCTTGCGAGGAATTCAAGCTGGTGATCT
TAAAATCTTGAAAGAAAAGCTTGAGCAAGAGGCGTCTGAAAATCTTGGTA
TGGCCATGATTTATACACTGGTTACATCAGCTAAGGAGTGGCTGTCTGAA
AGATATAGCCAGGATGCCGGTATTGATAACACTGGAGAAGAAGAGTTGGA
AAAAGATGAGGTAATTGTTCCACATGGAGAACCAGTCACTGTTGAGACAT
TTTTAGCATGGAGGGAAAGGTTTGAGGCAGAGTTGGCATTGGAGCGCGCC
AAGTTAATGCCTGAGTCTGCGTTAACAGCACCCAAGGAGAAAAAGCTCAC
AGGCAGACAATGGTTTGAAAGTGGAAGAGCTACTGCAGTATCTCAGAAAG
GTGCAGTTACAGTCAATGAAGTATCTGATGATGAGGATGACGAAGATATT
GACTTTGATGATGATGATTTTGAAGATGACGAGGTAGATATGCTTGAACA
TTATCTTGCTGAGAAATCTGACTCATCCACTCACTCTTCAAGGCAGCCGA
GCTGAATGGAAGCATTATAAACTACGAATGTTCTTGTCGGAAATGACT
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