CF836232

Overview
NameCF836232
Unique NameCF836232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_ANADF (Urease accessory protein ureG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.985e-81
Identity = 147/215 (68.37%), Postives = 172/215 (80.00%), Query Frame = -2
Query:  192 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 836
            F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VTNDIFT+ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L CESGGDNLAA+FSRELADY IY+IDV+GGDK+PRKGGPGITQADLLV+NKTDLA+A+GADL VM RDA RMR  GP +FAQV  G+GV EI  H+L A+  + G
Sbjct:   19 FHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVTNDIFTREDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILFCESGGDNLAAHFSRELADYTIYVIDVAGGDKVPRKGGPGITQADLLVVNKTDLATAVGADLDVMARDAARMRGDGPVVFAQVTRGVGVPEIAGHVLHAYRHAVG 233          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_SCHPO (Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe GN=SPCPB16A4.05c PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.967e-79
Identity = 143/215 (66.51%), Postives = 179/215 (83.26%), Query Frame = -2
Query:  186 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 830
            R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+  VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +GADL+VM+RDA ++R+ GP +FAQVK+ +G++EI   IL A +++   K
Sbjct:   72 RELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIGVVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTELLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLVGADLSVMDRDAKKIRENGPIVFAQVKNQVGMDEITELILGAAKSAGALK 286          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_SORC5 (Urease accessory protein ureG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.101e-77
Identity = 148/214 (69.16%), Postives = 169/214 (78.97%), Query Frame = -2
Query:  195 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 836
            FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L +     LL+ ESGGDNLAA +SREL DY IY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA  +GADL VMERDA RMR  GPF+FAQ     GV EI++HIL A   +T
Sbjct:   83 FSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQEDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGDNLAAQYSRELVDYTIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAPHVGADLGVMERDARRMRGDGPFLFAQCNRSQGVPEIIDHILSAMRRAT 295          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_CYTH3 (Urease accessory protein ureG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.459e-74
Identity = 140/208 (67.31%), Postives = 166/208 (79.81%), Query Frame = -2
Query:  186 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 806
            RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL   F   +LL  ESGGDNLAA+FS+EL DY +Y+IDVSGGDKIPRKGGPGITQADLLVINK DLA  + ADL+VMERD+ +MR  GPF+FA+ K   G++EI+NHIL A E +   K
Sbjct:   29 RNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFTSEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESGGDNLAAHFSKELVDYSVYVIDVSGGDKIPRKGGPGITQADLLVINKIDLAHLVNADLSVMERDSKKMRGDGPFLFARAKDCFGIDEIINHILTAREKALEAK 236          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_METNO (Urease accessory protein ureG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ureG PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.238e-65
Identity = 125/191 (65.45%), Postives = 147/191 (76.96%), Query Frame = -2
Query:  210 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 779
            VGIGGPVG+GKTALM  LCK LR +Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F A DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR   P++F  ++ G GVEE+   +++A
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRARYDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPALDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTRRMRGSRPYVFTSLRQGEGVEEVARFVVEA 201          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_METS4 (Urease accessory protein ureG OS=Methylobacterium sp. (strain 4-46) GN=ureG PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.142e-65
Identity = 123/191 (64.40%), Postives = 147/191 (76.96%), Query Frame = -2
Query:  210 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 779
            VGIGGPVG+GKTALM  LCK LR ++ L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F + DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR G P++F  ++ G GVE +   +++A
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRGRFDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPSLDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTQRMRGGRPYVFTSLRRGDGVEAVARFVIEA 201          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG1_METRJ (Urease accessory protein ureG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.200e-64
Identity = 120/191 (62.83%), Postives = 146/191 (76.44%), Query Frame = -2
Query:  210 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 779
            VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+S  F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA  +GADL+VME D  RMR   P++FA ++ G G + +   + +A
Sbjct:   10 VGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGADLSVMESDTQRMRGTRPYVFASLREGTGADAVARFVEEA 200          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_PSEU5 (Urease accessory protein ureG OS=Pseudomonas stutzeri (strain A1501) GN=ureG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.869e-64
Identity = 123/194 (63.40%), Postives = 151/194 (77.84%), Query Frame = -2
Query:  219 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 797
            N +   VGIGGPVG+GKTAL LALC+ LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L VM+RDA +MR   PF+F+  K G G+EEI++ I
Sbjct:    2 NTQPLRVGIGGPVGSGKTALTLALCQALRDRYNLAVVTNDIYTQEDAQFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPMVGASLEVMDRDARKMRGERPFVFSNQKVGQGLEEIISFI 195          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG1_METPB (Urease accessory protein ureG 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.513e-63
Identity = 119/191 (62.30%), Postives = 146/191 (76.44%), Query Frame = -2
Query:  210 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 779
            VGIGGPVG+GKTALM  LC+  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA  +GADL+VME D  RMR   P++FA ++ G G + +   I++A
Sbjct:   10 VGIGGPVGSGKTALMEQLCRRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMRRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGADLSVMESDTQRMRGTRPYVFASLREGHGADRVATFIVEA 200          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_PSEFS (Urease accessory protein ureG OS=Pseudomonas fluorescens (strain SBW25) GN=ureG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.976e-63
Identity = 123/194 (63.40%), Postives = 149/194 (76.80%), Query Frame = -2
Query:  219 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 797
            N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+  F   DL+L ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L +M  D  RMR+G PF+F+  K G+G+EEIV  I
Sbjct:    2 NTQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNQALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLELMNSDTQRMRNGKPFVFSNQKTGVGLEEIVAFI 195          
The following BLAST results are available for this feature:
BLAST of CF836232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UREG_ANADF7.985e-8168.37Urease accessory protein ureG OS=Anaeromyxobacter ... [more]
UREG_SCHPO1.967e-7966.51Uncharacterized urease accessory protein ureG-like... [more]
UREG_SORC54.101e-7769.16Urease accessory protein ureG OS=Sorangium cellulo... [more]
UREG_CYTH31.459e-7467.31Urease accessory protein ureG OS=Cytophaga hutchin... [more]
UREG_METNO1.238e-6565.45Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG_METS46.142e-6564.40Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG1_METRJ5.200e-6462.83Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_PSEU58.869e-6463.40Urease accessory protein ureG OS=Pseudomonas stutz... [more]
UREG1_METPB1.513e-6362.30Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_PSEFS1.976e-6363.40Urease accessory protein ureG OS=Pseudomonas fluor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836232 ID=CF836232; Name=CF836232; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTTTACAGATCAAGCAGCCACTTCAATTGCTTTATCA
TTGAGAACAAAAAGTTATCAGATGAGTTGAAACCAGAAACCTGATAAAAA
TTTTTGACGAGGACGGTTTGTGCTGAAACTAATAAAATACAAGACAACAA
ACTAAAACAACTTCAGAGAAGTGGTATCAACGCCGCTTCTTCCCTGTTGA
TGCTTCCCAAGCCTGTAAAATGTGATTCACTATTTCCTCCACACCAAGCC
CGTGCTTGACCTGAGCGAAGATAAAAGGCCCTCCATCACGCATCCGGAGT
GCATCACGCTCCATTACTGCTAAGTCAGCTCCTATTGCTGAAGCAAGGTC
AGTTTTGTTTATCACCAGAAGGTCAGCTTGGGTGATGCCTGGGCCACCTT
TCCGAGGAATTTTATCACCACCAGAAACGTCTATTATATAAATGATATAG
TCTGCAAGTTCCCTGCTGAAGTTGGCAGCTAAATTATCTCCCCCAGATTC
GCAAAGGAGTAGGTCTGCTTTGAACAAGTTAGAAAGTTCCTCGAGAGGGC
CCAGATTGATGCTGATGTCTTCACGAATTGCAGCATGAGGACATCCACCT
GTTTCCACAGCACGTATTCTCTCCTCAGGCAGAGCACCATTCCGCATCAG
GAATTCACCATCTTCTTTTGTGAAAATATCATTTGTGACAGCTGCAAGAC
TGTACTTGTCCCGCAAGAATTTACACAAAGCCAGCATTAAAGCTGTTTTC
CCAGTACCAACAGGGCCACCAATGCCAACGGTAAAAGCTCTCTCATTGAA
ATTTCTGCTGAGAATAGGCGGAGCTCTTCTGCTGAAA
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