CF836244

Overview
NameCF836244
Unique NameCF836244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.545e-37
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 2
Query:   17 ISQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            ++  A  KL   + LCM V+    A AITCGQV+ SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:    1 MASSAVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.247e-36
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = 2
Query:   29 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            A  KL   + LCM+V+ P+ AQAITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.628e-36
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = 2
Query:   29 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            A  KL   + LCM+V+ P+ AQA+TCGQVS +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.524e-34
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   32 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            A+ ++ A V CM+V  P + +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.563e-34
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   98 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            ITCGQVS SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.290e-33
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 2
Query:   17 ISQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 367
            ++  A +KL  A++LC++V  P +   ITCG VS  LAPCIG+L+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   AAGLPG CGV IPY IS ST+C+ V
Sbjct:    1 MASSAVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.685e-33
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 2
Query:   26 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            MA L  ++ LVL CM+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.200e-33
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 2
Query:   26 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.874e-33
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   17 ISQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            ++  A +KL   + LCM V+    A AITC QVS +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  A S+  +N  NA  LPG CGV++PYKISTST+C+ V+
Sbjct:    1 MASSAVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF836244 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.874e-33
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 2
Query:   26 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 370
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CF836244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO9.545e-3761.02Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU1.247e-3661.40Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV1.628e-3659.65Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN1.524e-3461.06Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI7.563e-3473.63Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_SPIOL1.290e-3356.41Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_BRANA1.685e-3359.83Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT2.200e-3360.68Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP_PYRCO2.874e-3354.24Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP3_BRANA2.874e-3358.12Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836244 ID=CF836244; Name=CF836244; organism=Citrus sinensis; type=EST; length=555bp
AGAAAATCTCAGGCAGATATCTCAAATGGCTGCCCTCAAGCTTGTTTCAG
CTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATA
ACATGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAG
ATCGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCA
ACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTG
AAGCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGG
TCTTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCA
CTGACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAG
GTTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGT
GTCCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGC
GCCCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCAAAAAAAAAAA
AAAAA
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