CF836246

Overview
NameCF836246
Unique NameCF836246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836246 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = -1 
Query:  239 GFTNLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLAFGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMMT 631
            GF+NLDENL++EVLKH DA+TLA ++CV+K+WHKTAQDERLWELICTRH+ N+GC   QLRSVVLA GGFRRLHSLYL  L +             P PR       A +G+DE+ L+LSLLS+RYYE M+
Sbjct:   31 GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSK-------------PNPR-------ARFGKDELKLTLSLLSIRYYEKMS 141
[Close]
BLAST of CF836246 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = -1 
Query:  242 NLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLAFGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMM 622
            +L E+L+FEVL+ A+ARTLA AACV++ W + A+DERLWE  C R +AN+G + +QLR+VVL+ GGFRRLH++Y+  L     G P    +  P         P   GRD+V LSLSL S+ +++ M
Sbjct:   75 DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQP---------PVRLGRDQVQLSLSLFSIGFFQNM 192
The following BLAST results are available for this feature:
BLAST of CF836246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GID2_ARATH1.033e-3861.07F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
GID2_ORYSJ1.547e-2647.24F-box protein GID2 OS=Oryza sativa subsp. japonica... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02K12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836246 ID=CF836246; Name=CF836246; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTCACAATTCTAGTTTTAGCATAATAAGAATACCTATAA
CAAATTTAAGTCCCAGATTACATACATACGAAACGCTTTTTTTCTTTTTC
TTTATAAAAAAAGAAAAGAAAAGAAAACCAAAACTCACCAGCCAAAAAGG
AGGAAAAAAGGGGGGAAAAAACAGAGATAGAAGGTAGATAGACAAGGAGG
ATGGAGTAAATATATCATTGCTTGGTTAGATCCCTAATAGTCATCATCTC
ATAGTAACGAACGGAAAGCAGAGACAAGGAGAGATGGACCTCGTCTCTCC
CCCAGTGGGCCGGGGTCTTGGGGCCCATGACGCGCGGGAGAGGATTCCAC
TTGGAGGAAGAAGGCGGAGCGCCGGGTGGCAGCCTGGGAAGCTGGTGGAG
GTAAAGGGAGTGAAGGCGACGGAAGCCACCGAAAGCCAGGACCACGGATC
TCAGCTGTTGGGTAGCACACCCAACGTTAGCGAAGTGGCGGGTGCAGATC
AACTCCCAGAGGCGCTCGTCTTGAGCCGTCTTGTGCCAAAGCTTGTTGAC
GCAGGCCGCCCGCGCCAAAGTCCTGGCGTCCGCGTGTTTCAACACCTCGA
ACAGAAGGTTCTCGTCCAGATTTGTGAAGCCAGTTTCTTTGGATTGCTCT
CCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTGTTTGACTTTCTTCAT
CTTTTGCTTGTCTTCGGCGGTGACCGGGGAATC
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