CF836258

Overview
NameCF836258
Unique NameCF836258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836258 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = -3
Query:  395 FLCANGYGPKLIQVITRIPARC-PAKRPRPENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGA-AFGSISWSDGKHEVRSPLVVT 805
            FLCA  Y    I+ ++R    C P+K     +LNYPS    F+    GV +  + RTVT+VG     Y+VKV S   GV ++V+P+ L F E  +K S+ VT T DS       SG+ +FGSI WSDGKH V SP+ ++
Sbjct:  626 FLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPS----FAVNVDGVGAYKYTRTVTSVGGAGT-YSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSS----KPSGSNSFGSIEWSDGKHVVGSPVAIS 755          
BLAST of CF836258 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = -3
Query:  398 FLCANGYGPK-LIQVITRIPARCPAKRPR--PENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSDGKHEVRSPLVV 805
            FLC  GY    L  ++      C +  P    ++LNYP+I  L    ++  +   F R VTNVG P++VYT  V +P KGV +TV+P  L F++  +K SF V V A      +       G + W   +H VRSP+V+
Sbjct:  611 FLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQ-LTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAP-KGVEITVEPQSLSFSKASQKRSFKVVVKAKQ----MTPGKIVSGLLVWKSPRHSVRSPIVI 743          
BLAST of CF836258 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = -3
Query:  389 FLCANGYGPKLIQVITRIPARCPAKRP-RPENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSDGKHEVRSPLVVTQL 805
            FLC  GY  + ++ IT   + C +    R  +LNYPS     S       ++ F RT+T+V    + Y   + +P+ G+T++V P+ L F     + SF +TV    K  V++       S+ WSDG H VRSP+ +T L
Sbjct:  600 FLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG--LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS------ASLVWSDGVHYVRSPITITSL 730          
The following BLAST results are available for this feature:
BLAST of CF836258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH3.427e-1741.73Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
XSP1_ARATH1.261e-1135.25Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
CUCM1_CUCME1.261e-1132.86Cucumisin OS=Cucumis melo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02K20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836258 ID=CF836258; Name=CF836258; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTCATGAAGAAGCCTTGCTAAATTCAACAACTATTT
AATGTTACAGTGCTTGATGGGAGAACCCTGCTCTACCTTTTAGCAGTAGC
TGCTGGTACAAAAAGCAAGTAAATATGTAATTATATGAACTCAAAACAGC
AATCATTTCTTATAATTGAGTTTTTAAAAGCCTATACTTTATGTAAAGTT
GAGTATATAAACTTAGTTCAGTTTATACATACAACATACATCCACTTAAC
TTGAAAGAGACAAGTACTCCCAACCTCTCTACTTCTATCTTGCCGAAAGT
GAAAAAAAACACAGTGCGCACACATTACAAAAGCCATAAAAGCAAGTAGC
TTCTCCTACAAGTTACCTCATCCAGGTTACAGAGGGTCCAATTGGGTAAC
CACAAGTGGGCTTCGAACCTCGTGCTTCCCGTCAGACCACGATATTGACC
CGAACGCAGCACCAGAGTCATTCAACACCAAGTTCTTGCTATCAGCAGTT
ACCGTCACCACAAAGCTGCTCTTCTTAACACCCTCTGTGAAGACCAATCT
TGATGGTTTCACAGTCACTGTCACTCCTTTCTCCGGAGACACAACTTTCA
CTGTATACACAGCATTTGGCTGACCAACATTGGTCACGGTTCTGATAAAA
CTCTTGCTTGAAACTCCCCTGGATTGTGTCGAGAACAATGCGGCAATCGA
AGGGTAGTTCAAATTCTCGGGCCTTGGCCTTTTAGCCGGACATCTCGCTG
GTATTCGTGTGATCACCTGAATTAACTTTGGTCCATAACCATTAGCACAT
AAAAAGT
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