CF836259

Overview
NameCF836259
Unique NameCF836259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836259 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.739e-74
Identity = 135/226 (59.73%), Postives = 168/226 (74.34%), Query Frame = 2
Query:    5 LVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPGLVYDITNDDYVNFLCANGYGPKLIQVITRIPARC-PAKRPRPENLNYPS 679
            LV DAHLLPA  +G   GD ++ Y+++  NPTA+I   GT++G+KP+PVVA+FS+RGPN + P ILKPDLIAPGVNILAAWT A GPTGL SD R+ EFNI+SGTSM+CPHVSG AALLKS HP+WSPAAIRSA+MTTA       +P+ D ATG  STP+D GAGHV+   A +PGL+YD+T +DY+ FLCA  Y    I+ ++R    C P+K     +LNYPS
Sbjct:  437 LVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPS 662          
BLAST of CF836259 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 103/223 (46.19%), Postives = 136/223 (60.99%), Query Frame = 2
Query:   14 DAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPGLVYDITNDDYVNFLCANGYGPKLIQVITRIPARCPA-KRPRPENLNYPS 679
            D++ LP+  L  ++  A   YI S  +P ATI FK T +    APVV SFS+RGPN    +++KPD+  PGV ILAAW  +V P G     R T FNI+SGTSM+CPH++G A  +K+ +P WSPAAI+SA+MTTAS       PM   A  N    + +G+GHVN  +A+ PGLVYD    DYV FLC  GY  + ++ IT   + C +    R  +LNYPS
Sbjct:  427 DSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVG--GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS-------PM--NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPS 636          
BLAST of CF836259 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 97/222 (43.69%), Postives = 136/222 (61.26%), Query Frame = 2
Query:   23 LLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPGLVYDITNDDYVNFLCANGY-GPKLIQVITRIPARCPAKRP--RPENLNYPS 679
            + PA ++ S  GD +  YI+ST + +A I     +    PAP VASFS+RGPN  +  +LKPD+ APG++ILAA+T     TGLD D + ++F ILSGTSMACPHV+G AA +KS HPDW+PAAI+SA++T+A       +P++     N    + +G G +N  RA  PGLVYD+ +  YV FLC  GY    L  ++      C +  P    ++LNYP+
Sbjct:  439 MAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQVT--IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA-------KPISRRV--NKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPT 649          
BLAST of CF836259 vs. ExPASy Swiss-Prot
Match: SUBV_BACSU (Minor extracellular protease vpr OS=Bacillus subtilis GN=vpr PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 60/191 (31.41%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   26 LPACALGSDEGDAVKAYISSTANPTATIDFKGTI---LGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPGLVYDITNDDYVNFLCANG 589
            +P   L  ++G+ + + + +    T    FK T+   LG +    VA FS+RGP  ++  ++KPD+ APGVNI++       PT  D D     +    GTSMA PH++GA A++K A P WS   I++A+M TA  + +S+        G        GAG   +  A+    +    +  Y  FL  NG
Sbjct:  448 VPTIKLSLEDGEKLVSALKAGETKTT---FKLTVSKALGEQ----VADFSSRGPV-MDTWMIKPDISAPGVNIVSTI-----PTH-DPD-HPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSD--------GEVYPHNAQGAGSARIMNAIKADSLVSPGSYSYGTFLKENG 615          
The following BLAST results are available for this feature:
BLAST of CF836259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SUBL_ARATH1.739e-7459.73Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME3.537e-4346.19Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH1.138e-4143.69Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
SUBV_BACSU4.663e-1131.41Minor extracellular protease vpr OS=Bacillus subti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02K20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836259 ID=CF836259; Name=CF836259; organism=Citrus sinensis; type=EST; length=679bp
ACGTTTAGTTGGTGATGCTCATCTTTTACCAGCTTGTGCCCTTGGTTCTG
ATGAAGGTGATGCAGTTAAAGCTTACATTTCTTCAACAGCTAATCCGACG
GCTACGATTGATTTCAAGGGGACTATTCTCGGAATCAAGCCGGCACCTGT
GGTGGCTTCGTTTTCAGCCAGGGGGCCAAATGGGTTGAATCCGGAGATTC
TTAAACCGGATTTGATTGCTCCCGGTGTTAACATTCTTGCTGCTTGGACG
GAGGCTGTTGGGCCGACGGGGTTGGATTCAGATTTGAGGAAAACTGAGTT
TAATATCTTGTCTGGTACATCAATGGCATGCCCACATGTGAGTGGTGCAG
CGGCTTTGCTTAAGTCAGCTCACCCGGATTGGAGTCCGGCTGCTATAAGG
TCTGCTATGATGACTACTGCTAGTATAGTTGATAATAGCAACCAGCCCAT
GACTGATGAGGCTACTGGAAATGCATCAACCCCGTATGATTTTGGTGCCG
GCCATGTAAATCTTGATAGAGCAATGGATCCAGGGTTGGTTTATGATATT
ACCAATGATGATTATGTTAACTTTTTATGTGCTAATGGTTATGGACCAAA
GTTAATTCAGGTGATCACACGAATACCAGCGAGATGTCCGGCTAAAAGGC
CAAGGCCCGAGAATTTGAACTACCCTTCG
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